Othy007704.1
Basic Information
- Insect
- Ormyrus thymus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_035582935.1
- Location
- JAWWEM010000054.1:5549856-5551574[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.1e-102 1.8e-97 327.2 38.0 1 300 28 322 28 322 0.94 2 3 0.0063 2.2e+02 1.9 4.4 122 172 322 372 320 381 0.90 3 3 0.052 1.8e+03 -1.1 5.7 137 236 358 394 341 397 0.49
Sequence Information
- Coding Sequence
- ATGGAGTCATCTGTAGCTGGCAGACGGCGTACTGCCACCAGACATTCTGCAGATCAAGTGTTAGATCGAATTGCTAAAGAGgcAGAGGCAAGATTAGCGGCAAGAAGACAAGCTAGAGCAGAAGCAAGAGAAATAAGAATGAAAGAATTAGAAAGACAAcaaaaagaagcagaagaaaGTGCAGACAGAGTGTTGTGTATAATAGATACCAATAGAGCCATGAGGGTAACTCCTGATCCTGCACGTGCTTCTCGCCTTCTTgcaaattctaataattttcagtCAAGTCGAAGGTCTTCTGAAGATTCTCTTGAAGATGCCGGTGTTAGTAGAGATCTTCGCctgGAGCTGAAGGAGttggaagaaaaatttaaaaatgcaatgatTGCAAATGCTCAATTGGACAATCTTAAGTGTACTCATGTATATCAACttgaattgttaaaagatCAAGTAGAAGAActtgaagtaaaaaattcagatttaaaacgtcaaaataaagagaagaaTCGCGAAGTAGATCAGACGAAACGCGAATGTCAACGGTACAAAGAAGAATTGGAAATATACAGGGCACAGCTTCAAGAAAGAGATACTTTAATACAAGAATATGGTTTAGTCATAGTAGAAGATGAAGGTAGTGAAGGTGAAGAATCACAGAAAGAAAATGGAACTATTTCTAGAAAAAGAGTGCTAGTCAGTATAGAAGCTGCAGAATTGTTGCAAAATGCTGGAGAAGGTTCTTTAGATGTTCGGCTGAAGAAATTTGCATCAGAAAGGAAGGAAATGCAGGATGAAATTAGACATCTTACATTAGAGGTAGAAGACGCAAGAAATCGAATGAGGCCAGAGCGATCTTTAGTTTCATCATTAggttCAGATTCAGAAGATACTCAAAGAGAAGCAAATAAACTGCTAGCAGAATATAAGTTTAAACTACAAAAAGCAGAACAAGATATGTCAACTCTTCAAGCAACTGTGGCAAGGTTAGAAAGTCAAGTGATTCGTTATAAATCATCAGCTGAAGCTTCCGAGAAAGCTGAAGATgaattaaaagtagaaaaaagaaagctacAAAGAGagattAGAGAATCGCAAGCTCGAGTTGAAGAGCTAGAAACGGCCAATTCACATTTGCAACGACGTTTGGATAAACTGAAAAATGCTAAATCGACGCTCTTCAAAGAACTTTGA
- Protein Sequence
- MESSVAGRRRTATRHSADQVLDRIAKEAEARLAARRQARAEAREIRMKELERQQKEAEESADRVLCIIDTNRAMRVTPDPARASRLLANSNNFQSSRRSSEDSLEDAGVSRDLRLELKELEEKFKNAMIANAQLDNLKCTHVYQLELLKDQVEELEVKNSDLKRQNKEKNREVDQTKRECQRYKEELEIYRAQLQERDTLIQEYGLVIVEDEGSEGEESQKENGTISRKRVLVSIEAAELLQNAGEGSLDVRLKKFASERKEMQDEIRHLTLEVEDARNRMRPERSLVSSLGSDSEDTQREANKLLAEYKFKLQKAEQDMSTLQATVARLESQVIRYKSSAEASEKAEDELKVEKRKLQREIRESQARVEELETANSHLQRRLDKLKNAKSTLFKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01110117;
- 80% Identity
- -