Othy000689.1
Basic Information
- Insect
- Ormyrus thymus
- Gene Symbol
- tfip11
- Assembly
- GCA_035582935.1
- Location
- JAWWEM010000001.1:8260696-8263010[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-60 2.6e-56 192.2 17.7 26 275 84 326 72 326 0.95 2 2 0.00043 5 7.6 0.8 242 270 338 366 328 371 0.85
Sequence Information
- Coding Sequence
- atggatcttaaaaatacaaatattgcTGACTGGGAAACTCATACCAAAGGAATTGGatcaaaattactttttaagcaaGGTTACAAAATAGGTAAAGGTCTTGGAAAATCATTACAAGGTATTAATTCACCAGTAGAAATTTGtgcaaaaaaaggaagaggtgGTATAGGATCTAGTAGTAATAGTGAtgagaaaattagaaaaacaaagtCTGGTGTCCAAAGTCTGGAAAAGAATAAAGCTCCacataAGTTAGCATCTAACatcatttcttcaaaaatgaaGGAAAGTCTAGTAAACTGGGATCCTTTACAAGAACCAAATTTCCCATTAGCTTCATTCAAAGaatggaaaaatattctagAATATGGTCAACAAAACGTTGAATTTGAATCAAAGAGTTTTTATGATCAACTTGTATCAAATACTTGGTTACCAGTAGTTCGTGCTTCCATAAAAAATTGGGATTGTAGACAACCATATAGccttattaatttagttagaAGTTGGTTACTAATTATTCCTTCTTGGATGAAGGATAATATATTCAGCATGATTGTTCATCAAAAATTAGGCATTGCTGTGGAAAATTGGAATCCTAATAGTGGTGACTTAATTCACAATTGGATTGACCCTTGGTTATCTGTAATGAgaGTTGAAATGGATACATTAATATGTCCAAtaattagaagaaaattatCTTACGCTTTTGATGCATGGCATCCATCTGACTCATCTCTTAGAATAATGTTCAAAAACTgctcaaaaatattatctaacTGTGATATAAATGACTTCTTAGTCAGATTTGTTGTaccaaaattacaaattgctttatctaaattaattatcaatccACATCAGCAAAATTTAGAACAGTGGGATTGGGTGATGAATGAATGGGAAGAGTTGATTCCTGTTAAGATAATGGCAGCAacactaaataaatttttctttcctaaATGGCTGCATGTTTTAGCACTTTGGTTAAATCATTCAACTAATTATGAGCAAATGATTAATTGGTATAAGGCTTGGAAAGGAATGCTAAGTAAAAATCTACTTgcagaattaataattaaagaaaatttgaataaaggtTTGGATATGATGAGCAGAACAATTAACATTCCACAATGCGTTGAAACGCACGTAATCGATCgagtattatatttaataacctTAGAGCGCGAACAATTGCTAACATCGAAAATTTTCCATCCAAAGAAGGAAgTATCAACAGAgataaattcttcaaaattagttATAGGTAGTTTTAAGGATTTAGTCCAAAGAAAATGTGAACATaaaggtattttatttatgcctCTTCCAAATCAACAcaATGAAAAGTGGTCTCCAACGAGACTAAAGTCTATCCTGAAAAAGATCTTAAAGAATTGA
- Protein Sequence
- MDLKNTNIADWETHTKGIGSKLLFKQGYKIGKGLGKSLQGINSPVEICAKKGRGGIGSSSNSDEKIRKTKSGVQSLEKNKAPHKLASNIISSKMKESLVNWDPLQEPNFPLASFKEWKNILEYGQQNVEFESKSFYDQLVSNTWLPVVRASIKNWDCRQPYSLINLVRSWLLIIPSWMKDNIFSMIVHQKLGIAVENWNPNSGDLIHNWIDPWLSVMRVEMDTLICPIIRRKLSYAFDAWHPSDSSLRIMFKNCSKILSNCDINDFLVRFVVPKLQIALSKLIINPHQQNLEQWDWVMNEWEELIPVKIMAATLNKFFFPKWLHVLALWLNHSTNYEQMINWYKAWKGMLSKNLLAELIIKENLNKGLDMMSRTINIPQCVETHVIDRVLYLITLEREQLLTSKIFHPKKEVSTEINSSKLVIGSFKDLVQRKCEHKGILFMPLPNQHNEKWSPTRLKSILKKILKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -