Oros007236.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ormyrus rosae
Gene Symbol
ush
Assembly
GCA_035047165.1
Location
JAWWML010000052.1:3078086-3087356[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.011 1.3 10.5 0.4 3 21 292 310 290 315 0.91
2 8 5.4e-05 0.0063 17.7 1.3 1 23 352 374 352 374 0.98
3 8 0.14 16 7.0 1.9 2 20 416 434 415 436 0.93
4 8 0.018 2.2 9.8 4.4 2 21 671 690 670 691 0.94
5 8 0.072 8.5 7.9 0.0 3 20 718 735 716 737 0.90
6 8 0.0077 0.91 10.9 0.0 2 23 776 797 775 797 0.96
7 8 0.011 1.3 10.4 1.4 1 23 803 825 803 825 0.99
8 8 0.096 11 7.5 0.4 3 21 941 959 940 960 0.92

Sequence Information

Coding Sequence
ATGCTCGTAGCCGCGGAGAGACATAAAGACCCTGGCGAAGgGGAGGATGAGGAGTGGAGCGATTCGGAGAAGACACCGTCCGTGAGCAGCGGCCTGGAGGGTTGCGGCTCGGCAGTCTCCAGTCCCTCCGGCCAGCTGGTGGACGAGGAGCTGGTCgccctgccgccgccgccgcgactcAGCGCCGCGGGACTGCCGACGCCCGACGACGTCAGGCTCAGGCTCGGCGCCCTCAACGACGATGTGCGCAAGAGGCTCGCCGACGAGATCGAGAACGTTCGAGCCCTGCGGAACCAGCACCACCACCAGcagcatcatcatcatcatcaccaGCAGCGGCCCCCCTCCCGGCCGCCCTCCGTGCAGGACTCGTCGCCCAAGTCGCGTCCGGAGGCCGCCGACGAGGACTCGAACCTGGCGGTGCGCGAGGACGAGCGcagcgcctcctcctcctcgtcgagCAGCGGCAGCCTCCGCCGCGGCCAGGCCCTGCGCAGGGACTCGGAGGAGTCGTCGCGCACCAGGTGCCCCTCCGCCGGCGACGAGGTCGCCGAGCCGAAGCGGCCCCGCctggaggaggaggcggcggcggcggcgaccgtCGCCGCGCCCCGACTGAGACTCAATGCTAGTCTGGCGACGGACCCGGCGCTCCGACCCCAGGCCGTCGCCGCTCTTACTATTAAACCCGAGAACGCCGCCTCGCCGCCCAATCCCACGCCGCCCCTCGCCGCCGGTCTTCAGAACGCGATAGCAACGGGCCACCTCTTCGTGCTGCCCAACGACGCGAAGGACAGCCTGACGGtggaggcagcggcggcggcggcggctgcagcggccgcggccgccgcgggaCGGCCCACGCCTCTGATCTGCCCTCCGTGCGGCATCCGCTTCAGCTCGGCGAGCACGCTGGACGCCCACCAGAAGTACTACTGCTCGCACCGGCCGCGCCTCGAGACCGACGCCGAGAAcaacgacgaggacgacgacaaGGGCGCGCCTTCGGCCGGCTCGGCCGGCTCCGCGGTCAAGTTCGAGGCGCGCAAGGCCTACGCCTGCCCGCACTGCTCCTACAGCGCGGACAAGAAGGTCTCGCTCAACCGACACATGCGCATGCACGCCGCCTCGCCGGTCCAGCCGGTGCCGCCCGCCCCCGCCATGCAGCCCATCAACGCCGCCCCCGCGGCCGGACACAACGCCGTAGTCGCCGCCAACGGGAGCATCAACGACGAGCCCGAGAAGTACTGTCGGAACTGCGATATCAGGTTCAGCTCGCTAAAAACGTACCGGGCGCACAAGACGCACTACTGCAGCACGAGGCACGTGGTGAAGGACACCCCGACGGCGTCGACGCCGTCGGCGAGCACGGCCACCTCCTCCCTGAAAGGATCCCCGCCGACGAGCGCGAGTCCCGGcgactcgccgccgccgcagccctGCCTGGCCCTGCCGACCAACCCGATCATCATCGTGCCGTACTCGCTGGTGCGAGGCGCCTCGGTCCTCGCGGCCCCGGGCCTGCCCGCCCCCGACACCCCCTGCTTCCTCATGCCCAACGGCACCCTCCAGCCCATGACCCGCGGgcccaccaccaccaccaacACCCCCACGACGATCGTCTCGACCATCTCGGGGATGGAGTCGCCGGCGCCGACGCCCGTCGTCGCCCCCAGCGTCCTCAGGGCGGCCAACAAGCCCGCCACCCCCGTGGCGATCGGCCCGGCGCCCCCCAACTCGCCGAACTCGGCCGCCTCCGCGCCCCTGGATCTTAGCGTCAGGAGGTCACCGGACCACGAGAAGGAGAACCGAGTCTCGCCGCTGCCGtcgtcgctgccgccgccgggcAGCCCCCGTTCCCGCGGCAGCGTAAGTCCGCGCGCCAGGTCCATGTCGGCGGCGCAGGCGCCCGACCGGATTCCGCCCACGCCGCCCACCGAGCTGGCGCTTAGACTCGCGgaactgccgccgccgcccgttCCCGGCGTACTCGTCAAACAAGGCGTTTCCAGATGCAAGGAGTGCAACATCGTGTTCTGCCGTCACGAGAACTTCGTCGCCCATAAAAAGCACTACTGTCaagcgcgcgagagcagcGTGACGAGTCCACCGCCGCCGGATACGCCCTCGCCGCCCCTCGTCCAGTTGATTTGTGTCGCCTGCGGTATCAGGTTCGCCTCGATGGACAACCTCGTCGCCCATCAATCCTACTACTGTCCCAAGAGAACCGAGCCTCCGGATCATTCTTCGCGCTGCCCCAAATGCAAGGCGCCGATCGACGCAGCCACGCCGCACACCTGCGCCGTCGGACAGACCGGCGGCTGGAGATGTCCGGTTTGCGGAGCAGTCAGTCCCACTGCCGGCGCAGCTCAGCGACATATGGACTCCCATCAAGGTGTCAAGGCTTTTCGATGTACGATCTGTCGGTATAAAGGTAACACCCTCCGAGGGATGAGAACACACATCAGGATGCACTTCGAGAAACGCGGGGCCGATCTTCAGGAGGAGAATTACATAACGTGTCTATTGGAGGACGACGTAACTGCCCCGACCCCAGAACCAGCACCGGCGACTACTCCCGAAGAAATCCCGTCGGacccgcagcagcagcagcagcagcagatcAACGGCAAAACCGATACCATCGTGCGCAAGAGTCCGCAACCTCCGCGGCCGGTTACAACGTCGCCGGCGGCTTCCCCCGCACCTACAGTCCCGTCGCCGACCAATTCCGGCAAAGTGAAACAGGAGCGCGAGGACACCCCACCCCCGCCACCGCCGGAGGAGAGCCTCGACGAATCGAAACCCGGGCCACGGTACTGTCGGTCCTGCGACATCAGCTTCAACTACCTGAGCACCTTCATAGCTCACAAGAAGTACTACTGCTCGAGTCACGCTGGCGAGGCCAGcaacaacaataacaataataacaacaaCAACGCAGCGGCCGCTTCTCCGGCACCGATGACCAGCGGAAGGACCGAGGCGTCCGTACTATAA
Protein Sequence
MLVAAERHKDPGEGEDEEWSDSEKTPSVSSGLEGCGSAVSSPSGQLVDEELVALPPPPRLSAAGLPTPDDVRLRLGALNDDVRKRLADEIENVRALRNQHHHQQHHHHHHQQRPPSRPPSVQDSSPKSRPEAADEDSNLAVREDERSASSSSSSSGSLRRGQALRRDSEESSRTRCPSAGDEVAEPKRPRLEEEAAAAATVAAPRLRLNASLATDPALRPQAVAALTIKPENAASPPNPTPPLAAGLQNAIATGHLFVLPNDAKDSLTVEAAAAAAAAAAAAAAGRPTPLICPPCGIRFSSASTLDAHQKYYCSHRPRLETDAENNDEDDDKGAPSAGSAGSAVKFEARKAYACPHCSYSADKKVSLNRHMRMHAASPVQPVPPAPAMQPINAAPAAGHNAVVAANGSINDEPEKYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDTPTASTPSASTATSSLKGSPPTSASPGDSPPPQPCLALPTNPIIIVPYSLVRGASVLAAPGLPAPDTPCFLMPNGTLQPMTRGPTTTTNTPTTIVSTISGMESPAPTPVVAPSVLRAANKPATPVAIGPAPPNSPNSAASAPLDLSVRRSPDHEKENRVSPLPSSLPPPGSPRSRGSVSPRARSMSAAQAPDRIPPTPPTELALRLAELPPPPVPGVLVKQGVSRCKECNIVFCRHENFVAHKKHYCQARESSVTSPPPPDTPSPPLVQLICVACGIRFASMDNLVAHQSYYCPKRTEPPDHSSRCPKCKAPIDAATPHTCAVGQTGGWRCPVCGAVSPTAGAAQRHMDSHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGADLQEENYITCLLEDDVTAPTPEPAPATTPEEIPSDPQQQQQQQINGKTDTIVRKSPQPPRPVTTSPAASPAPTVPSPTNSGKVKQEREDTPPPPPPEESLDESKPGPRYCRSCDISFNYLSTFIAHKKYYCSSHAGEASNNNNNNNNNNAAAASPAPMTSGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01110576;
90% Identity
iTF_01113819;
80% Identity
-