Oros008544.1
Basic Information
- Insect
- Ormyrus rosae
- Gene Symbol
- -
- Assembly
- GCA_035047165.1
- Location
- JAWWML010000052.1:24688676-24693047[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.026 3 9.3 0.2 1 23 280 303 280 303 0.95 2 13 0.0077 0.91 10.9 0.8 2 21 314 333 313 334 0.95 3 13 0.0023 0.27 12.6 0.9 2 23 342 364 341 364 0.96 4 13 0.0041 0.48 11.8 0.6 2 21 449 468 448 469 0.93 5 13 0.0023 0.27 12.6 3.0 3 23 481 502 479 502 0.95 6 13 0.00096 0.11 13.8 0.7 2 20 512 530 511 532 0.93 7 13 0.029 3.4 9.1 3.9 2 23 540 562 539 562 0.94 8 13 3.5 4.2e+02 2.6 3.0 1 23 656 679 656 679 0.95 9 13 0.0096 1.1 10.7 1.9 1 21 684 704 684 705 0.94 10 13 0.27 32 6.1 4.1 2 22 713 733 712 733 0.94 11 13 0.083 9.8 7.7 0.2 2 21 751 770 750 771 0.91 12 13 0.037 4.4 8.8 5.7 2 23 780 802 779 802 0.96 13 13 0.035 4.1 8.9 0.9 1 21 813 833 813 834 0.94
Sequence Information
- Coding Sequence
- ATGGAACAtgttaaagataatttaacaGTATCTGAGTATGGGAAACAGATACAAACAGATGCTGATTTGATTATGCAAGTTGCAATGAAAGAATCATTTTCTAAAGAACTAGAAGAAGTACAAGATGTTACAACTAAAATGAAACATGTTAAAGATACTCTAACTGAGAGTAGAAAACAAATGCAAACAGATTCTATGATCCTTTCAGTTGTAACTAAGAAATCATTGActaaaaaactggaaaaagtGCAAGATGTTACAACTGAAATGGAACATGTTAAAGGTATTCCAGCAATAACTGAGAATAGGAAACAAATACAAACAGGCACTGGTTTGATTATTCCAGTTGTAACTAAAGAAACATTGGCTAAAGAACTGGAAGAAGTAAAAGATGTTACAATTGAAATAGAACATGCTaaagatattgtaaaaataactgaGAATAGGGAACAATTAGAAGCAGATGTAGAAGATAATAATGTAATTGATGCTACAAATAGTGAAATTATGTGCAATAACACAGAGTTGGGTAAAAGCAAATCAATTAGTTTAGAACAAGTGTGTAAACAGATGTCAATTTCagGATTACAGatgtttgaaaaacattttgatgaaaatgaatGGTCATATATTTCTGAAGAATCTGacGTACCATACGAATTCGTTGATATTCAATCTGTTGATAAACGTAATACAAATGGAACAGCTCCAATTAGTAAAAGTAGAAGATCAAACATGAAATTTTATCGAGAAATTTGCATGAATTGCAAGAAAGTAcaagaaagaattaataacAAGGCTCTAAGTAAGTGCCAGACTTGTCAAGAAGATGTATATTATGCTTGTGTAGAATGCAATAAAGAGTACAAATATATATCTGGAGTATATAAACATGTAATGGTAAACCATACGAAAAATGAGAACCGTCCAAAACCTATTAAATGTTTGAGATGTGGCAGAGAGTTTAAAATGTCGTTTAATATGAAGGATCACTTGAGATTTTGCATGTTAGATGCATGTATACAATGTCCATTTTGTCCATTAAAGACGAAACGTAAATCTTCTGCAAGAAAGCATTTATTAAGAATGCATAGTCGTAAATTTAATGTGGAAGAAATTGAAGATGTGCTTGAAAAAGTTGTTGAAAACTCGAAAGAACTTAGAGataaAGCCGAGCGTAAATTAACGAAGCAGTTTGGTAGTTCCTCGACTACCTCTCGATTGCGTCCTTTTCCTATCCGCAACTACATACAGCTCTATTGTGATCAGTGCAAGATAGTAATCAAGAAACAGAGCGGTAAGGACCAGCGTAGCTGCTTAAATTGTCGTAACAAACTGCAACTTGAGTGCAGAAAATGTGGTCGACGCTACAAGTATCGCAGCAGCATGTCAGTTCACTTACAGAATCAATGCCTGCGAACCGAGCCGATAGTCATAAATTGCGACCAATGCGAGTACGTCACCTGCACCAAGTCTCGGCTCACGAGGCACATCCAGCGGCGGCACGCGTTCATTCTTCCTAGTGAATATGTTACGTGCAATAGATGCCAGAAGAGTTTTAGGCTGAAGGAAGATTTGAGGAACCACAAGTACATCTGTGGGAAGATTCCGCACCTGCACTGCGAGTTTTGCGATTATAGGGCAAAGCATAAGAGTTTGCTGAGGTCTCACATTGACAGTAAGCATCCAGAGACGAGATTGGCTATTATTCAGCCGACGAAGAACAATGTTGAAGATGAGGGAGAAATCATTAGTGAGAGTATAGaaattttagaattcaaaACGGAAAGCGGGTTGGATAACACACCCAATATCATTAATGCTTCAGCAATTATGTCATtcgaagaaaatttacaatcgcAATTTATATCCGACTCGATCAAAGCCTACTGCACGAACTGCAACTTAGAAATCCGAGCAATGGAAAAGATAACAAAATGCCAAGTGTGCTGCACACCGTTCATCTACTGTTGCACTCGGTGCAATCAAATTCGTCGCAACTTCATCCTTTTACGTCTCCATGTGATCCGCAAACACAGCGAGAAAACACATCATTGCCCGTCCTGTCAACGCAGTTTCGCCTACGAGAATGACTACCGACAGCACCAAAAAATTTGCAACCTAGCGCCGTATCTTCACTGTCATCGTTGTTCATTTCAAACCAAATACAAAAGCACCTTCCAGGCGCACATCAGACGCGGAACTTGCGTGGTAAATCAAAAACTGATTGTACGAAAGCGAGATAGAGTTTACTGTTATAAGTGCGGAAAAGATTTCGGGTCTCAACTGATGATGTCGAAGCACGTCAATCGGTGCGGattgtctaaaaaaatacTCAGCTGTAgtcattgtaattttatgacTGCACATAAGCACCTGCTTATTAATCATATCCAATCTAAACATGCTTCTAGGCTGTTTAGAAATGTTGATGCCTTTCAGTGTAGCGTTTGCACGCTAATGTTCAAGAATTACTTCGTGTACAGTAGACATATTGAGAAAAGAAAGTgccgcgaaaagaaaaagtaa
- Protein Sequence
- MEHVKDNLTVSEYGKQIQTDADLIMQVAMKESFSKELEEVQDVTTKMKHVKDTLTESRKQMQTDSMILSVVTKKSLTKKLEKVQDVTTEMEHVKGIPAITENRKQIQTGTGLIIPVVTKETLAKELEEVKDVTIEIEHAKDIVKITENREQLEADVEDNNVIDATNSEIMCNNTELGKSKSISLEQVCKQMSISGLQMFEKHFDENEWSYISEESDVPYEFVDIQSVDKRNTNGTAPISKSRRSNMKFYREICMNCKKVQERINNKALSKCQTCQEDVYYACVECNKEYKYISGVYKHVMVNHTKNENRPKPIKCLRCGREFKMSFNMKDHLRFCMLDACIQCPFCPLKTKRKSSARKHLLRMHSRKFNVEEIEDVLEKVVENSKELRDKAERKLTKQFGSSSTTSRLRPFPIRNYIQLYCDQCKIVIKKQSGKDQRSCLNCRNKLQLECRKCGRRYKYRSSMSVHLQNQCLRTEPIVINCDQCEYVTCTKSRLTRHIQRRHAFILPSEYVTCNRCQKSFRLKEDLRNHKYICGKIPHLHCEFCDYRAKHKSLLRSHIDSKHPETRLAIIQPTKNNVEDEGEIISESIEILEFKTESGLDNTPNIINASAIMSFEENLQSQFISDSIKAYCTNCNLEIRAMEKITKCQVCCTPFIYCCTRCNQIRRNFILLRLHVIRKHSEKTHHCPSCQRSFAYENDYRQHQKICNLAPYLHCHRCSFQTKYKSTFQAHIRRGTCVVNQKLIVRKRDRVYCYKCGKDFGSQLMMSKHVNRCGLSKKILSCSHCNFMTAHKHLLINHIQSKHASRLFRNVDAFQCSVCTLMFKNYFVYSRHIEKRKCREKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01110498;
- 90% Identity
- iTF_01110498;
- 80% Identity
- -