Olab016210.1
Basic Information
- Insect
- Ormyrus labotus
- Gene Symbol
- -
- Assembly
- GCA_035582975.1
- Location
- JAWWEO010011134.1:19113-24722[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.025 2.7 9.3 0.2 1 23 264 287 264 287 0.95 2 13 0.0076 0.8 11.0 0.8 2 21 298 317 297 318 0.95 3 13 0.0023 0.24 12.6 0.9 2 23 326 348 325 348 0.96 4 13 0.004 0.42 11.9 0.6 2 21 433 452 432 453 0.93 5 13 0.0023 0.24 12.6 3.0 3 23 465 486 463 486 0.95 6 13 0.00093 0.098 13.8 0.7 2 20 496 514 495 516 0.93 7 13 0.029 3 9.2 3.9 2 23 524 546 523 546 0.94 8 13 3.5 3.6e+02 2.6 3.0 1 23 640 663 640 663 0.95 9 13 0.0094 0.98 10.7 1.9 1 21 668 688 668 689 0.94 10 13 0.27 28 6.1 4.1 2 22 697 717 696 717 0.94 11 13 0.082 8.6 7.7 0.2 2 21 735 754 734 755 0.91 12 13 0.036 3.8 8.8 5.7 2 23 764 786 763 786 0.96 13 13 0.034 3.6 8.9 0.9 1 21 797 817 797 818 0.94
Sequence Information
- Coding Sequence
- atgcCTTACCATCATCATAATACCATGATTTCACCAGTGGATACTCAAAtgatacaattaattataactaaaGAATCATCaactaaagaattaaaagtgcAAGATGTTACAATAGAAATGGAACAtgttaaagataatttaacaGTATCTGAGTATGGGAAACAGATACAAACAGATGCTGATTTGATTATGCAAGTTGCAATGAAAGAATCATTTTCTAAAGAACTAGAAGAAGTACAAGATGTTACAACTAAAATGAAACATGTTAAAGATACTCTAACTGAGAGTAGAAAACAAATGCAAACAGATTCTATGATCCTTTCAGTTGTAACTAAGAAATCATTGActaaaaaactggaaaaagtGCAAGATGTTACAACTGAAATGGAACATGTTAAAGGTATTCCAGCAATAACTGAGAATAGGAAACAAATACAAACAGGCACTGGTTTGATTATTCCAGTTGTAACTAAAGAAACATTGGCTAAAGAACTGGAAGAAGTAAAAGATGttacaattgaaataaaacatgctaaagatattgtaaaaataactgaGAATAGGGAACAATTAGAAGCAGATGTAGAAGATAATAATGacGTACCATACGAATTCGTTGATATTCAATCTGTTGATAAACGTAATACAAATGGAACAGCTCCAATTAGTAAAAGTAGAAGATCAAACATGAAATTTTATCGAGAAATTTGCATGAATTGCAAGAAAGTAcaagaaagaattaataacAAGGCTCTAAGTAAGTGCCAGACTTGTCAAGAAGATGTATATTATGCTTGTGTAGAATGCAATAAAGAGTACAAATATATATCTGGAGTATATAAACACGTAATGGTAAACCATACGAAAAATGAGAACCGTCCAAAACCTATTAAATGTTTGAGATGTGGCAGAGAGTTTAAAATGTCGTTTAATATGAAGGATCACTTGAGATTTTGCATGTTAGATGCATGTATACAATGTCCATTTTGTCCATTAAAGACGAAACGTAAATCTTCTGCAAGAAAGCATTTATTAAGAATGCATAGTCGTAAATTTAATGTGGAAGAAATTGAAGATGTGCTTGAAAAAGTTGTTGAAAACTCGAAAGAACTTAGAGataaAGCCGAGCGTAAATTAACGAAGCAGTTTGGTAGTTCCTCGACTACCTCTCGATTGCGTCCTTTTCCTATCCGCAACTACATACAGCTCTATTGTGATCAGTGCAAGATAGTAATCAAGAAACAGAGCGGTAAGGACCAGCGTAGCTGCTTAAATTGTCGTAACAAACTGCAACTTGAGTGCAGAAAATGTGGTCGACGCTACAAGTATCGCAGCAGCATGTCAGTTCACTTACAGAATCAATGCCTGCGAACCGAGCCGATAGTCATAAATTGCGACCAATGCGAGTACGTCACCTGCACCAAGTCTCGGCTCACGAGACACATCCAGCGGCGGCACGCGTTCATTCTGCCTAGTGAATATGTTACGTGCAATAGATGCCAGAAGAGTTTTAGGCTGAAGGAAGATTTGAGGAACCACAAGTACATCTGTGGGAAGATTCCGCACCTGCACTGCGAGTTTTGCGATTATAGGGCAAAGCATAAGAGTTTGCTGAGGTCTCACATTGACAGTAAGCATCCAGAGACGAGATTGGCTATTATTCAGCCGACGAAGAACAATGTTGGAGATGAGGGAGAAATCATTAGTGAGAGTATAGaaattttagaattcaaaACGGAAAGCGGATTGGATAACACACCCAATATCATTAATGCTTCAGCAATTATGTCATtcgaagaaaatttacaatcgCAATTTATATCCGACTCGATCAAAGCCTACTGCACGAACTGCAACTTAGAAATCCGAGCAATGGAGAAGATAACAAAATGTCAAGTGTGCTGCACACCGTTCGTCTACTGTTGCACTCGGTGCAATCAAATTCGTCGCAACTTCATCCTTTTACGTCTCCATGTGATCCGCAAACACAGCGAGAAAACACATCATTGCCCGTCCTGTCAACGCAGTTTCGCCTACGAGAATGACTACCGACAGCACCAAAAAATTTGCAACCTAGCGCCGTATCTTCACTGTCATCGTTGTTCATTTCAAACCAAATACAAAAGCACCTTCCAGGCGCACATCAGACGCGGAACTTGCGTGGTAAATCAAAAACTGATTGTACGAAAGCGAGATAGAGTTTACTGTTATAAGTGCGGAAAAGATTTCGGGTCTCAACTGATGATGTTGAAGCACGTCAATCGGTGCGGATTGTCTAAAAAAATACTCAGCTGTAgtcattgtaattttatgacTGCGCATAAGCACCTGCTTATTAATCATATCCAATCTAAACATGCTTCTAGGCTGTTTAGAAATGTTGATGCCTTTCAGTGTAGCGTTTGCACGCTAATGTTCAAGAATTACTTCGTGTACAGTAGACATATTGAGAAAAGAAAGTgccgcgaaaagaaaaagtaa
- Protein Sequence
- MPYHHHNTMISPVDTQMIQLIITKESSTKELKVQDVTIEMEHVKDNLTVSEYGKQIQTDADLIMQVAMKESFSKELEEVQDVTTKMKHVKDTLTESRKQMQTDSMILSVVTKKSLTKKLEKVQDVTTEMEHVKGIPAITENRKQIQTGTGLIIPVVTKETLAKELEEVKDVTIEIKHAKDIVKITENREQLEADVEDNNDVPYEFVDIQSVDKRNTNGTAPISKSRRSNMKFYREICMNCKKVQERINNKALSKCQTCQEDVYYACVECNKEYKYISGVYKHVMVNHTKNENRPKPIKCLRCGREFKMSFNMKDHLRFCMLDACIQCPFCPLKTKRKSSARKHLLRMHSRKFNVEEIEDVLEKVVENSKELRDKAERKLTKQFGSSSTTSRLRPFPIRNYIQLYCDQCKIVIKKQSGKDQRSCLNCRNKLQLECRKCGRRYKYRSSMSVHLQNQCLRTEPIVINCDQCEYVTCTKSRLTRHIQRRHAFILPSEYVTCNRCQKSFRLKEDLRNHKYICGKIPHLHCEFCDYRAKHKSLLRSHIDSKHPETRLAIIQPTKNNVGDEGEIISESIEILEFKTESGLDNTPNIINASAIMSFEENLQSQFISDSIKAYCTNCNLEIRAMEKITKCQVCCTPFVYCCTRCNQIRRNFILLRLHVIRKHSEKTHHCPSCQRSFAYENDYRQHQKICNLAPYLHCHRCSFQTKYKSTFQAHIRRGTCVVNQKLIVRKRDRVYCYKCGKDFGSQLMMLKHVNRCGLSKKILSCSHCNFMTAHKHLLINHIQSKHASRLFRNVDAFQCSVCTLMFKNYFVYSRHIEKRKCREKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01113000;
- 90% Identity
- iTF_01113000;
- 80% Identity
- -