Oros008355.1
Basic Information
- Insect
- Ormyrus rosae
- Gene Symbol
- -
- Assembly
- GCA_035047165.1
- Location
- JAWWML010000052.1:21711367-21715783[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00021 0.024 15.9 2.9 1 23 346 368 346 368 0.98 2 18 0.092 11 7.6 1.5 2 23 414 435 414 435 0.95 3 18 0.00059 0.069 14.5 0.5 2 23 497 518 496 518 0.97 4 18 8.3e-06 0.00097 20.3 2.7 1 23 562 584 562 584 0.99 5 18 4.5e-05 0.0053 18.0 8.6 1 23 589 611 589 612 0.96 6 18 0.00063 0.074 14.4 0.8 1 21 618 638 618 642 0.92 7 18 0.023 2.6 9.5 4.1 2 23 722 743 721 743 0.96 8 18 5.9e-05 0.007 17.6 3.9 1 23 791 813 791 813 0.97 9 18 0.00034 0.04 15.2 0.7 1 20 818 837 818 839 0.94 10 18 1.7 2e+02 3.6 0.3 2 23 850 871 850 871 0.96 11 18 1.5e-05 0.0018 19.4 0.7 2 23 909 930 908 930 0.97 12 18 3.1e-05 0.0037 18.5 1.6 1 23 935 957 935 957 0.95 13 18 2.1e-05 0.0024 19.0 1.4 1 23 963 985 963 985 0.99 14 18 5.5e-06 0.00065 20.8 0.4 1 23 1001 1023 1001 1023 0.95 15 18 4.5e-07 5.3e-05 24.3 0.6 1 23 1029 1051 1029 1051 0.99 16 18 4.9e-05 0.0057 17.9 0.2 1 23 1057 1079 1057 1079 0.97 17 18 0.00018 0.021 16.1 4.1 1 23 1085 1107 1085 1107 0.96 18 18 0.0077 0.9 11.0 0.7 1 20 1113 1132 1113 1134 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCATCGGAGTGGACACGTCGGGCGAGCCGCGGCCGCAGCAGGAGCAGCAACCGCAGGTCCTCGAGCTCTGCCGCATCTGCCTGCTCGACAGCACGGCGATGCGCGGCCTCTTCCTCGAGGACGACGGACCCAGCCTCGCTCACAAGGCCATGAGCTTCGCCAGTGTTAAGattctgCCAGGAGATGGATTGCCTTCTCATATTTGCTGTGATTGTAGTGATAAACTTGACTCTGCTTACAAGTTCAAATTGCAAGTTGAACAAGCTGATAATGTGTTGCGAGAAAGACTGGATTCCTTAAACATAAAGGAAGAACTCTTTTTTAGCGATGTAGATGTAAATTTGGCAGCCCACAGAAATGATGTTGGAGAAATCACTGcagaaagtttaattttaaaagatcaCCACATGCACAtggatttattaaatgtacaaaaaaaaatatacaatggACAAGATATACTGCATCGTCAGAGTGATGATTTAGAAACACAAAATGATAATATTGATATACAGCAACATGAGGAAGTACAAAAAACTGAAGATGAGGAGCAGttgcaaattaataatgaaaaagatgttattgttaataataaccAAGAGATTGAAATGCAACAAATGTCGAGTGAACAAGCAAACCAAGCATTTGAAGCCCAGGAAATACAGGAAATGATGCTCAATGACATAAATGATCAAGAAAGGATGCAAAAGGACATGAATCATGCTCAACAGTTGGCAATACATGAACATAATTATGTAGCAGAATCATCTGATTTTGCTAATGTAAATGACGTCCAGAATTCAGagCAACTTGAAAATGATACTAAAgaagatattgaaaaagaatcaTTGAATGAAGAAATATACGATGCATCAGTAGAGTCCACAGGCAATGAATCTATTCGTCGAAGCAAACGTAGAATTAGTCAACGAAAATCTCAGGTGAATTGCGATTCTGATGAAGAAAACTACTTTGAAAATCTTAATCTTAGTTCTAGATTGAAAAAAGTGCAATCgcagaaagtttattttatgtgTTACTTATgtgaaaaacaatttgtatCAAAGGAAATGTTAAAGGAGCACATGCATACCCACGAAGAAGTTAGAAAAACGCTTTCTCTTACTAATAAAAAACCTGTGGAGAAGTTGCAGAAATCACCTGAAAAACCTCAAGATACTTCAGTAAACTTATCACCAGCAAAATCACCATCAAGTGGTAAAAAGCCAAATACTTGTCCTCATTGTGGAAAAGAATACCTGTACattatttcattcaataaGCATTTAAAACAGCATGAAAAAGCACAAGGAAAGGATGAATCTATGCCTTTAGAAGTTTCCTTTGAAGAGGATGATGATGCTTTAGATTTTCATGATTATGATGAAAACCCTATTGTAGGTTCTGATAGTGAAgaagatgaaataaaagaagaaaatcaagTTCAGATAAAGCAGGAATTTACAAAGCAAAATTCCATTAAGTGCAACGTTTGTGAAGAAGAATTTGATTCTGCcgataaactaaaaaatcatCGAACAAAGCACGTTATGGAGGGTGTGCTTAGTGAACAAAATGATGAACAGTTAGATTCAGGTCTTATAAACGAAAATGAAAGCAAAgatgaaatcaattttgaagaatctacatttttgaaaaaagaagatgTTAAGGAATTTAAATGTCCTCACTGTCCAGTGGTATATTCtcacaaaaaaagtttagctCGTCATTTAGAAACTCATTCTTCTGTTAAATACACATGCAAATTATGTACTCAGTCATTTAGTCGTAAGGATCATTTGCGACATCACATTGAACGGCACCATGTTCGTCAAAAAAGCTTCAAATGCACGCaatgtaataaaagctttGGAAATGAATTGACTTTAAGAAATCATTTGATAGCTACTAATCATAAAACGATCGTGCAAGGTCAGGAATATGATCCTAATAAAAGGATTAAGAGGGTAGCAGCAAAAGCAgcgcaaaaaattattgataagatTAAAACTGATCTTAATATGGatgaagaagaggaagaggaggaggaaactgaaagagaaaaagatagAGACTTCATGTTTGCCAAAGAAGAATTTGAGATTCCTGATGGTGTAAagccATCTAAAAAGCTTCAacgtaataaaactttaacttGTGCAACTTGTAATCACAAATGTCCAACAAAACAGGCTCTTACAAAACACATGGAGCAACACGTGAAGgacgaaaatttaatcaagcAAGAAAAGAATGTAGCTCAAAAATCTGAAGAAAcccaagaaaaagaagagaacgAAATTGACCATGAAGAAGATGACGATGATTTTGAAGGTGGCCTTGATTGGCCAATGGATAGCCACGAGTGCCCaacctgcaaaaaaaaatacagcacGAAAAAATCTCTGCTTCGTCATCAACTACTTCATGAGGAACCAAATTTCGAGTGCGATATCTGTAATGtcaagttttatagaaaagatAAACTTAAAGCTCACTACGACAAGTGCTCCGAAAAAAATCCAGATCAAGTGCGAAAGTGTAATATTTGCagcgatatttttgaaaacaacgAAATTTTGAAGGAGCATCGAGCGAAACATGTAATGGAAGGTATACTCACAGAGGAGGATCTTCGAGAAATTGAACCAAGACCAGAGGATCGGAATGGAGAAAAAGCACCGCGAAAGAGGCGCACAGACATTGTTGGATTGGAATGTACAGAATGTAATAAACGTTATACTTCGAGGAAAGGTCTTTTAAGGCACATACAGGTTCATGAGGGTAAAAAGTACTTGTGTGATATATGTCCAAAGAAATTCTACAGGAGAGagcatttgaaaattcacGTAGCCAAACACAATATGATTAAACCGTACAAATGTCCTCGATGTTcaaaacgttttattaaagaggagcaattaaataatcatataAGCAAACATGACAAAACATTCAAAAAGGCTAAAGAATCGGATACATCAAAGAGATTTTTGTGTGAAATATGTTCGAAGAGTTTCACGCAATCCACGACACTTATTGCACATTTGAGAGCTCACAATGGCATAAAACCGTACGTTTGCGAAGTCTGCTCCAGGCCTTTCACGACAAACGCTTACTTGAAAATGCATATGAGAACGCACACTCAAGAACGTCCCTACATTTGTCAGTATTGTTCTAGAGCTTTTGCGAGAGCTGATACTTTGGCCAACCACTTAACTTCGCATACCGGCGAGGCTAAGTACCACTGTAAGTACTGTCCGAAGAATTTCAGAAGATTGAAATCGCTCAAAGAGCACGTCTTTATTCACACTGGCCAGCGCCCTTATTCTTGTCCCACCTGCGATAGAAGATTCAATAATAACGGAAGCAGATATGCGCATAGCAAGAGATGTAAGCAAAATCTGTTGCAGAACAGGACAAATCAAATTACTGTGCAACCACTTACTGTTGAACAGGAACCTCTGACCGTTGAGCAAGAACAAGAAGAACAAGAACACCTGCAATTACAGGAACAGCAGCATCAACAGCTGCAGGAGCAACATTTGCAACTGCAAACTCAAAGGATACATCAAGCAACGATAAGCCAGGCTCAGGTCATAAAACCACAAAATGTGAAAACGATCACAATTACGAGGCAAGACGGAGGATTAACTCAGCAGCACGTGATGACGCATCAAGAGATACTTATGCCCTTGATACTTCCGTTAACAGTGACACTCACAGACGTAGGAGATGAGACTATTCTTCCCGAAGgcacgaaaatttttacgacGTAA
- Protein Sequence
- MDAIGVDTSGEPRPQQEQQPQVLELCRICLLDSTAMRGLFLEDDGPSLAHKAMSFASVKILPGDGLPSHICCDCSDKLDSAYKFKLQVEQADNVLRERLDSLNIKEELFFSDVDVNLAAHRNDVGEITAESLILKDHHMHMDLLNVQKKIYNGQDILHRQSDDLETQNDNIDIQQHEEVQKTEDEEQLQINNEKDVIVNNNQEIEMQQMSSEQANQAFEAQEIQEMMLNDINDQERMQKDMNHAQQLAIHEHNYVAESSDFANVNDVQNSEQLENDTKEDIEKESLNEEIYDASVESTGNESIRRSKRRISQRKSQVNCDSDEENYFENLNLSSRLKKVQSQKVYFMCYLCEKQFVSKEMLKEHMHTHEEVRKTLSLTNKKPVEKLQKSPEKPQDTSVNLSPAKSPSSGKKPNTCPHCGKEYLYIISFNKHLKQHEKAQGKDESMPLEVSFEEDDDALDFHDYDENPIVGSDSEEDEIKEENQVQIKQEFTKQNSIKCNVCEEEFDSADKLKNHRTKHVMEGVLSEQNDEQLDSGLINENESKDEINFEESTFLKKEDVKEFKCPHCPVVYSHKKSLARHLETHSSVKYTCKLCTQSFSRKDHLRHHIERHHVRQKSFKCTQCNKSFGNELTLRNHLIATNHKTIVQGQEYDPNKRIKRVAAKAAQKIIDKIKTDLNMDEEEEEEEETEREKDRDFMFAKEEFEIPDGVKPSKKLQRNKTLTCATCNHKCPTKQALTKHMEQHVKDENLIKQEKNVAQKSEETQEKEENEIDHEEDDDDFEGGLDWPMDSHECPTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICSDIFENNEILKEHRAKHVMEGILTEEDLREIEPRPEDRNGEKAPRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCSKRFIKEEQLNNHISKHDKTFKKAKESDTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYSCPTCDRRFNNNGSRYAHSKRCKQNLLQNRTNQITVQPLTVEQEPLTVEQEQEEQEHLQLQEQQHQQLQEQHLQLQTQRIHQATISQAQVIKPQNVKTITITRQDGGLTQQHVMTHQEILMPLILPLTVTLTDVGDETILPEGTKIFTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01113633;
- 90% Identity
- iTF_01113633;
- 80% Identity
- -