Oros006537.1
Basic Information
- Insect
- Ormyrus rosae
- Gene Symbol
- -
- Assembly
- GCA_035047165.1
- Location
- JAWWML010000032.1:10143842-10147528[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0016 0.19 13.1 0.1 1 23 29 51 29 51 0.98 2 20 1.6 1.9e+02 3.7 0.0 3 23 58 79 56 79 0.92 3 20 0.00024 0.028 15.7 6.6 1 23 84 106 84 106 0.97 4 20 0.00087 0.1 13.9 0.1 1 23 125 148 125 148 0.94 5 20 0.0098 1.2 10.6 4.6 1 23 157 179 157 179 0.99 6 20 0.015 1.8 10.0 0.1 2 23 186 206 185 206 0.96 7 20 0.0002 0.024 15.9 0.9 1 23 212 234 212 234 0.98 8 20 8.7e-05 0.01 17.1 1.1 1 23 240 262 240 262 0.98 9 20 0.0083 0.98 10.8 2.0 1 23 336 358 336 359 0.96 10 20 6e-05 0.007 17.6 4.3 1 23 365 387 365 387 0.98 11 20 0.00011 0.012 16.8 8.1 1 23 414 436 414 436 0.95 12 20 0.00028 0.033 15.5 4.8 2 23 442 463 441 463 0.97 13 20 0.01 1.2 10.5 0.3 1 23 468 490 468 490 0.97 14 20 1.2e-06 0.00015 22.9 1.4 1 23 498 520 498 520 0.98 15 20 0.68 80 4.8 2.3 1 23 526 549 526 549 0.94 16 20 0.00023 0.027 15.7 0.3 3 23 562 582 560 582 0.96 17 20 6.6e-06 0.00078 20.6 2.0 1 23 588 610 588 610 0.96 18 20 3.4e-08 4e-06 27.8 0.2 1 23 616 638 616 638 0.98 19 20 2.6e-07 3e-05 25.0 0.9 1 23 644 666 644 666 0.98 20 20 0.0006 0.07 14.4 1.7 1 21 672 692 672 693 0.96
Sequence Information
- Coding Sequence
- ATGTATTACATTCAAAACATCGCCGACATAAAAATCCCTTGTGTATATTTCAGATACAACCGCAAGTCCAAGAAGTCAAAAATCTTCGAGTGCACTTACTGTTCGACGATCTTGCCAAGCGATTCTCAACTAGCTCTGCACGTCCGCACGCACACGAACAAAAGCTACGGGTGTACCTTTTGCGGCATTCCTTTAGTCTCCAGTGAAGCTGTCAGTCAGCATCTCGGCAAGTACCACAAAGATGCGTGCTTCGCTTGCCCGACCTGTCGGAAGTGTTTCTCGACCAAGCACGGCTTCACGCTTCATACGCGCTCTCACTACGGAAAGAACGCGAAGGAACCTACTGCGAGTAAGAAACACCCAAAGAAGAGATTCGCTTGTCCAGTGTGCAACACGAAATACACGTCGGCCGCCTACCTGTCTGTGCACGCAAAGCTGCAGCACGGCGACGAAAGTACTCGGGACATTTATAAGTGCCAGCAGTGCGGATTTACCAGCAACTACAAAGCGAGTGTACACAAGCACTTGAAAAAGCACACGGGCGAGAATCTAGTCACTTGCGAAGTTTGCGGAAAGAGAGTGGACAAGTTTTATTTAGCGGTACACTCGAGGATTCACACTGGCGAAAAGCCCCATGTCTGCAAAGTATGTAACAAAGCTTTCGGCGCAAAGAAGTACTTGGTAGTCCACGAAAGGACGCACACTGGCGAGAGGCCATATCAGTGCACTTTTTGTGACAAAAGGTTCACGCAAGGGACACCATTGAAGGATCATGAAAGGATACATCTGAGATATGTCGAAGATGATACAAATatatTCGCCTACCCCCAGCGTTATTACCCTATGACGGTCTTGGCAGGGGAAAATAACTACAAGCGGCCCTCTTCGCCCGCCGTAATCACGAAGAAGAAGCAACAAATGAAAAAGCTCGAGTCGGAGCTGGTCGTCGTCAAGGTTGAGGAGGACCACAGCGAATCGTTTCTTAACGAGGACACGCCTCTGTCCTACCATTGCAATCTTTGCAACATCTACTTCGCCAAGCAGCCCTTGCTGGACATGCACATTATGATGCACCACAAGGTAAAGAATAAGTACGACTGCGCACACTGCGGCAGGAGCTGCCGCACGGCTTTGAGCCTTCGCCAGCACATGAAACGCCATAACAACGTCATTGTTACGCGCTCGAAAAAGACTGAGGAGGAAATTCAGTCGGAGGAGGAgcctcagcagcagcagaactTTCTGTGCAAGACCTGCGGCAAAACATTCCATCACAAAAGTAATTATCAAAAACATCTGTCGCGGCACATTGCCGGCGACCTCACTTGCAAGCACTGCCCGAAGAAGTTCCGTCTCTTCCGCGACTTGACGCGACACGAGAAAACGCACTTCCTTCCGAGCTACGCCTGTAAGGAGTGCGAGTACGAAACTACAGTCTTAGCTGCTCTACATATACATATGACCAGGCACACGGACAAAGGCGAGCTGCCCTTCAAGTGCAACGAATGCGACAAGCGATTTAGAAAAGCGACGGAGCTTCAGGAGCACTACAACATTCATTCGGGCGATAAACCCTTCGTCTGCCAGACCTGTTCGGCCGCTTTCTTCCTGAGAAGGCAGCTATCGGCGCACTGCCGACGCTTACACCCTGAACTGAAGGCGCAAAAAGTAACCAGTACCGCATGCGACATTTGCGGCAGGGTATTGGCTACAAAAAGGTCCTTGTTCAGACACAAAGAGAGCCACAATCCAACGAAGCTCTACCTCTGCGATTTTTGCGGAAAGAGCCTCAGCAGTGCGGAGCACCTGAAAAAGCACCGAAGAATTCACACCGGCGAAAAGCCGTACGTCTGCGATATATGCGGAAAGGGATTTACGGATTCCGAAAATCTCCGAATGCACAGGCGAGTGCACACCGGGGAAAAGCCGTATAAGTGCGATCAATGCCCGAAGGCGTTCAGTCAACGATCGACCCTCACCATTCATAGGAGAGCTCACACCGGGGAGCGGCCATACGTATGCCAGATTTGCCACAGGGGATTTTCGTGCCAGGGCAACTTGACTGCCCATCAAAAATCTACTTGTGTGTAG
- Protein Sequence
- MYYIQNIADIKIPCVYFRYNRKSKKSKIFECTYCSTILPSDSQLALHVRTHTNKSYGCTFCGIPLVSSEAVSQHLGKYHKDACFACPTCRKCFSTKHGFTLHTRSHYGKNAKEPTASKKHPKKRFACPVCNTKYTSAAYLSVHAKLQHGDESTRDIYKCQQCGFTSNYKASVHKHLKKHTGENLVTCEVCGKRVDKFYLAVHSRIHTGEKPHVCKVCNKAFGAKKYLVVHERTHTGERPYQCTFCDKRFTQGTPLKDHERIHLRYVEDDTNIFAYPQRYYPMTVLAGENNYKRPSSPAVITKKKQQMKKLESELVVVKVEEDHSESFLNEDTPLSYHCNLCNIYFAKQPLLDMHIMMHHKVKNKYDCAHCGRSCRTALSLRQHMKRHNNVIVTRSKKTEEEIQSEEEPQQQQNFLCKTCGKTFHHKSNYQKHLSRHIAGDLTCKHCPKKFRLFRDLTRHEKTHFLPSYACKECEYETTVLAALHIHMTRHTDKGELPFKCNECDKRFRKATELQEHYNIHSGDKPFVCQTCSAAFFLRRQLSAHCRRLHPELKAQKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRAHTGERPYVCQICHRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01113632;
- 90% Identity
- iTF_01113632;
- 80% Identity
- -