Oros009020.1
Basic Information
- Insect
- Ormyrus rosae
- Gene Symbol
- -
- Assembly
- GCA_035047165.1
- Location
- JAWWML010000052.1:31376483-31378414[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.9e-05 0.0022 19.2 0.3 2 23 4 26 3 26 0.95 2 21 1.9e-05 0.0022 19.1 0.2 3 23 33 54 31 54 0.93 3 21 1.9e-05 0.0022 19.2 0.5 2 23 60 82 59 82 0.97 4 21 3.7e-06 0.00043 21.4 0.3 2 23 88 110 87 110 0.94 5 21 4.2e-05 0.0049 18.1 0.4 2 23 116 138 115 138 0.96 6 21 2.5e-05 0.0029 18.8 1.7 1 23 171 194 171 194 0.94 7 21 0.0004 0.047 15.0 0.6 1 23 199 222 199 222 0.89 8 21 4e-05 0.0047 18.1 0.7 1 23 255 278 255 278 0.94 9 21 0.00019 0.022 16.0 1.0 1 23 283 306 283 306 0.93 10 21 0.00014 0.016 16.4 0.0 2 23 312 334 311 334 0.96 11 21 1e-06 0.00012 23.2 0.2 1 23 339 362 339 362 0.95 12 21 0.0054 0.63 11.4 3.3 1 23 367 390 367 390 0.97 13 21 1e-05 0.0012 20.0 0.2 1 23 395 418 395 418 0.95 14 21 4.6 5.4e+02 2.2 2.1 1 23 423 446 423 446 0.85 15 21 0.00042 0.05 14.9 1.6 1 23 451 474 451 474 0.94 16 21 9.6e-05 0.011 16.9 1.2 1 23 479 502 479 502 0.96 17 21 6.7e-05 0.0079 17.4 5.3 1 23 507 530 507 530 0.95 18 21 1.9e-06 0.00022 22.3 2.1 1 23 535 558 535 558 0.95 19 21 7.6e-07 9e-05 23.6 0.3 1 23 563 586 563 586 0.96 20 21 1.1e-05 0.0012 20.0 0.5 1 23 591 614 591 614 0.96 21 21 8.9e-05 0.01 17.0 1.3 1 20 619 638 619 642 0.93
Sequence Information
- Coding Sequence
- ATGACAATTCAATGCGACGTCTGCGGCAAGTTCTTTTCGAGAAGAAGCACTATGGTGGCTCACAAGCTGTCTGTACACGAAGGAGTATCACTTGACTGCGACGTCTGCGGCAAGAGATTTGCTCGGAAGTACACTTTGATCATTCACAAGGAATCTGCACACGAGGGAATAAAATCTGAATGCGACATCTGCGGTAAGACCTTTTTAAGAAGAGACAATATGAACGCTCACAAACGAACTGCGCACGGAGGAGTATCACTTGAATGCGACGTGTGCGGCAAGAGCTTTACTCGGAAACGCACTTTGATCATTCACAAGGAATCTGCACACGAGGGAATAAAATCGGAATGCGACATCTGCGGTAAGACCTTTTTAAGAAGAGACAATATGAACGCTCACAAACGATCTGCGCACGGAGGAGTAACATTTGAATGCGACGTCAGCGGCAAGAGCTTTTTAAGAATGGGTAATGCGCTCATTCACAACGGCTCTGCGCAGAATGGAATGAAATTTGATTGCGATGCGTGCGACAAGAGCTTCGCTCAGAAACATCATTTGATCGCTCACAAGCGAGCTGTCCACGAGGGAATAAGATTCGACTGTGACTTATGCGGCCGGGGCTTTATTCAGAAGCAGCATCTGATCATTCACAACCAGTTTGCACACGGAGTAATAAGAATACCTTGCGACGTCAGCGGCAAGAGCTTTTTAAGAATGGGTAATGCGCTCGTTCACAACGGGTCTGTGCAGAATGGAATGAAATTTGATTGCGATGCGTGCGACAAGAGCTTCGCTCAGAAACATTATCTGATCGCTCACAAGCGAGCTGTCCACGAGGGAATAAGATTCGACTGCGACGTATGCGACCGGGGCTTTATTCAAAAGCAGCATCTGATCATTCACAAGAAGTTTGCACACGGAGTAATGATAATACCTTGCGACGTTTGCGGCGAGAGCTTTACAAATAGTGAGGCGATATTCGCTCACAAGCAAACTATGCACAGCGGTGTGAAATTTGACTGCGACGATTGTGGTCGGAGTTTTGTACGAAAGCAAAGTCTCATTACACATATAAAAGCTGTGCACGcaggaataaaatttgactgtCACCTCTGCGAGAACAgcttttcaacaaaatataaGAGGATCGTACACAAGAGAACAGCGCACGGCAGAAGGAGATTTGAGTGCGACTATTGTGGTAAGAGTTTTGTACAAAAGAGAAGTATCATTGAACATATACAGGATGTGCACGCAGAGATAAAATTTGACTGCAACGTCTGCTGCAAGAGCTTCTCAGAAGAACAGAGGATGCTCGCTCACAAGCAATTTGCGCACGATGAAGTGCAGTTTGACTGCGACGTATGCAAAAAGAGCTTTTCAACTGAAGATAGAATGCTTAGGCACAAACGATTTATACACgctgcaataaaatttgaatgtgaCGTATGTGACAAGAGCTTTACTACGAAACGTCGTATGATGCTTCACAAACAATCTGCGCACgaaggaataaaatttgaatgcaaCTTATGCGACAAGAGCTTCACTCATAAGCATCATATGATAGCACACAAGGAATCTGCGCACgaaggaataaaatttgaatgcaaCGTATGCGGCAAGAGTTTCACTCAGAAGTATCATATGATCGCTCACAAGGAATCTACGCACGAAGGAGTAGGATTTGCCTGTGACCTCTGCGGCAAGAGCTTTTCAAGAGAAGACAAAATGATCCGTCACATGCAATCTGTGCACGAAGAAAGAGGATTTGACTGCGACCTTTGTGGCAGGAGCTTTGCAAGAAAAGACACTATGATCCGTCACAAGCAATCTGTGCACGAAGAAAGAGGATTTGACTGCGACCTTTGCGGCAAGAGCTTTGCAAGAAAAGACGCTATGATCCGTCACAAGCAATGTGTGCACAAGTGA
- Protein Sequence
- MTIQCDVCGKFFSRRSTMVAHKLSVHEGVSLDCDVCGKRFARKYTLIIHKESAHEGIKSECDICGKTFLRRDNMNAHKRTAHGGVSLECDVCGKSFTRKRTLIIHKESAHEGIKSECDICGKTFLRRDNMNAHKRSAHGGVTFECDVSGKSFLRMGNALIHNGSAQNGMKFDCDACDKSFAQKHHLIAHKRAVHEGIRFDCDLCGRGFIQKQHLIIHNQFAHGVIRIPCDVSGKSFLRMGNALVHNGSVQNGMKFDCDACDKSFAQKHYLIAHKRAVHEGIRFDCDVCDRGFIQKQHLIIHKKFAHGVMIIPCDVCGESFTNSEAIFAHKQTMHSGVKFDCDDCGRSFVRKQSLITHIKAVHAGIKFDCHLCENSFSTKYKRIVHKRTAHGRRRFECDYCGKSFVQKRSIIEHIQDVHAEIKFDCNVCCKSFSEEQRMLAHKQFAHDEVQFDCDVCKKSFSTEDRMLRHKRFIHAAIKFECDVCDKSFTTKRRMMLHKQSAHEGIKFECNLCDKSFTHKHHMIAHKESAHEGIKFECNVCGKSFTQKYHMIAHKESTHEGVGFACDLCGKSFSREDKMIRHMQSVHEERGFDCDLCGRSFARKDTMIRHKQSVHEERGFDCDLCGKSFARKDAMIRHKQCVHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01110357;
- 90% Identity
- -
- 80% Identity
- -