Basic Information

Insect: Ormyrus labotus
Gene Symbol: -
Assembly: GCA_035582975.1
Location: JAWWEO010023087.1:2239-3918[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 2.3e-05 0.0024 18.9 1.8 2 23 4 26 3 26 0.96

2 19 1.3e-05 0.0014 19.7 0.2 1 23 31 54 31 54 0.94

3 19 1.6e-05 0.0017 19.4 0.5 2 23 60 82 59 82 0.97

4 19 3.1e-06 0.00033 21.6 0.3 2 23 88 110 87 110 0.94

5 19 3.5e-05 0.0037 18.3 0.4 2 23 116 138 115 138 0.96

6 19 5.1e-05 0.0053 17.8 1.9 1 23 171 194 171 194 0.94

7 19 0.00019 0.02 16.0 0.8 1 23 199 222 199 222 0.92

8 19 0.00019 0.02 16.0 0.0 2 23 228 250 227 250 0.96

9 19 4.5e-05 0.0047 18.0 0.2 1 23 255 278 255 278 0.95

10 19 0.00021 0.022 15.9 3.7 1 23 283 306 283 306 0.97

11 19 7.5e-06 0.00079 20.4 0.2 1 23 311 334 311 334 0.94

12 19 3.9 4.1e+02 2.4 2.1 1 23 339 362 339 362 0.85

13 19 0.00036 0.037 15.1 1.6 1 23 367 390 367 390 0.94

14 19 7.2e-05 0.0075 17.3 1.0 1 23 395 418 395 418 0.96

15 19 2.9e-05 0.003 18.6 4.4 1 23 423 446 423 446 0.95

16 19 9.4e-07 9.9e-05 23.3 1.3 1 23 451 474 451 474 0.95

17 19 1.8e-07 1.9e-05 25.5 0.6 1 23 479 502 479 502 0.96

18 19 1.2e-05 0.0012 19.8 0.2 1 23 507 530 507 530 0.95

19 19 3.8e-06 0.0004 21.4 0.3 1 23 535 558 535 558 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	2.3e-05	0.0024	18.9	1.8	2	23	4	26	3	26	0.96
2	19	1.3e-05	0.0014	19.7	0.2	1	23	31	54	31	54	0.94
3	19	1.6e-05	0.0017	19.4	0.5	2	23	60	82	59	82	0.97
4	19	3.1e-06	0.00033	21.6	0.3	2	23	88	110	87	110	0.94
5	19	3.5e-05	0.0037	18.3	0.4	2	23	116	138	115	138	0.96
6	19	5.1e-05	0.0053	17.8	1.9	1	23	171	194	171	194	0.94
7	19	0.00019	0.02	16.0	0.8	1	23	199	222	199	222	0.92
8	19	0.00019	0.02	16.0	0.0	2	23	228	250	227	250	0.96
9	19	4.5e-05	0.0047	18.0	0.2	1	23	255	278	255	278	0.95
10	19	0.00021	0.022	15.9	3.7	1	23	283	306	283	306	0.97
11	19	7.5e-06	0.00079	20.4	0.2	1	23	311	334	311	334	0.94
12	19	3.9	4.1e+02	2.4	2.1	1	23	339	362	339	362	0.85
13	19	0.00036	0.037	15.1	1.6	1	23	367	390	367	390	0.94
14	19	7.2e-05	0.0075	17.3	1.0	1	23	395	418	395	418	0.96
15	19	2.9e-05	0.003	18.6	4.4	1	23	423	446	423	446	0.95
16	19	9.4e-07	9.9e-05	23.3	1.3	1	23	451	474	451	474	0.95
17	19	1.8e-07	1.9e-05	25.5	0.6	1	23	479	502	479	502	0.96
18	19	1.2e-05	0.0012	19.8	0.2	1	23	507	530	507	530	0.95
19	19	3.8e-06	0.0004	21.4	0.3	1	23	535	558	535	558	0.96

Sequence Information

Coding Sequence: ATGCCAATTCAATGCGACGTCTGCGGCAAGTTCTTTTCGAGAAGAAGCACTATGCACGCTCACAAGCAATCTGTGCACGAAGGTATAAAGTTTGACTGCGACGTGTGCGGCAAGAGATTTGCTCGGAAGAACACTTTGATTATTCACAAGGAATCTGCACACGAGAGAATAAAATCGGAATGCGACATCTGCGGTAAGACCTTTTTAAGAAGGGACAATATGAACGCTCACAAACGAACTGCGCACGGAGGAGTATCACTTGAATGCGACGTGTGCGGCAAAAGCTTTACTCGGAAGCGAACTTTGATCATTCACAAGGAATCTGCACACGAGGGAATAAAATCGGAATGCGACATCTGCGGTAAGACCTTTTTAAGAAGGGACAATATGAACGCTCACAAACGATCTGCGCATGGAGAAGTAACATTTGAATGCGACGTCAGCGGCAAGAGCTTTTTAAGAATGGGTAATGCGCTCGTTCACAGCGGGTCTGCGCAGAATGGAATGAAATTTGATTGCGATGCGTGTGACAAGCGCTTCGCTCAGAAACATCATCTGATCGCACACAAGCGAGCTGTCCACGAGGGAATAAGATTCGACTGCGACGTATGCGACCGGGGCTTTATTCAGAAGCAGCATCTGATCATTCACAAGCAGTTTGCACACGGAGTAATAATAATACCTTGCGACGTTTGCGGCGAGAACTTTACAAACAGTGAAGCGATGCTCGCTCACAAGCAAACTATGCACAGCGGTGTAAAATTTGACTGCGACGATTGTGCTCGGAGTTTTGAACGAAAGCAAAGTCTCATTACACATATAAAGGCTATACACGCaggaataaaatttgactgtCACCTCTGCGAGAAGAgcttttcaacaaaatataaGAGGATCGTACACAAGCGAACAGCGCACGGCAGAAGGAGATTTGACTGCGATTATTGTGGTAAGAGTTTTGTACAAAAGAGAAATATCATTGAACATATACAGGATGTGCACGCagagataaaatttgattgcaACGTCTGCTGCAAGAGCTTCTCAGAAGAACAAAGGATGCTCGCTCACAAGCAATTTGCGCACGATGAAGTGCAGTTTGACTGCGACGTATgcaaaaaaagcttttcaacTGAAGATAGAATGCTTAGGCACAAACGATTTGTACACGctggaataaaatttgaatgcgaCGTATGTGACAAGAGCTTTACTACGAAACGTCGTATGATACTTCACAAACAATCTGCGCacgaaagaataaaatttgaatgcgaCGTATGCGACAAGAGCTTCACTCATAAGCATCATATGATCGCTCACAAGGAATCTGCGCACgaaggaataaaatttgaatgcaaCGTATGCGGCAAGAGTTTCACTCAGAAGTATCATATGATCGCTCACAAGGAATCTGCGCACGAAGGAGTAGGATTTGCCTGTGACCTCTGCGGCAAGAGCTTTTCAAGAAAAGACAAAATGATCCGTCACATGCAATCTGTGCACGAAGAAAGAGGATTTGACTGCGACCTTTGCGGCAAGAGCTTTGCAAGAAAAGACGCTATAATCCGTCACAAGCAATCTGTGCACGAAGAAAGAGGATTTGACTGCGACCTTTGCGGCAAGAGCTTTGCAAGAAAAGACGCTATGATCCGTCACAAGCAATCTGTGCACAAGTGA
Protein Sequence: MPIQCDVCGKFFSRRSTMHAHKQSVHEGIKFDCDVCGKRFARKNTLIIHKESAHERIKSECDICGKTFLRRDNMNAHKRTAHGGVSLECDVCGKSFTRKRTLIIHKESAHEGIKSECDICGKTFLRRDNMNAHKRSAHGEVTFECDVSGKSFLRMGNALVHSGSAQNGMKFDCDACDKRFAQKHHLIAHKRAVHEGIRFDCDVCDRGFIQKQHLIIHKQFAHGVIIIPCDVCGENFTNSEAMLAHKQTMHSGVKFDCDDCARSFERKQSLITHIKAIHAGIKFDCHLCEKSFSTKYKRIVHKRTAHGRRRFDCDYCGKSFVQKRNIIEHIQDVHAEIKFDCNVCCKSFSEEQRMLAHKQFAHDEVQFDCDVCKKSFSTEDRMLRHKRFVHAGIKFECDVCDKSFTTKRRMILHKQSAHERIKFECDVCDKSFTHKHHMIAHKESAHEGIKFECNVCGKSFTQKYHMIAHKESAHEGVGFACDLCGKSFSRKDKMIRHMQSVHEERGFDCDLCGKSFARKDAIIRHKQSVHEERGFDCDLCGKSFARKDAMIRHKQSVHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01112851;
90% Identity: -
80% Identity: -