Basic Information

Insect: Ormyrus pomaceus
Gene Symbol: -
Assembly: GCA_900474385.1
Location: UCOM01000981.1:11753-15150[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00023 0.023 15.5 0.7 1 23 228 250 228 250 0.97

2 10 0.00043 0.042 14.7 1.3 1 23 257 280 257 280 0.97

3 10 0.00014 0.013 16.2 0.7 2 23 404 425 403 425 0.97

4 10 3.9e-06 0.00038 21.1 1.7 1 23 430 453 430 453 0.95

5 10 2.2e-05 0.0022 18.7 0.1 1 23 481 503 481 503 0.97

6 10 5.9e-07 5.7e-05 23.7 0.8 1 23 513 535 513 535 0.96

7 10 8.3e-07 8e-05 23.2 1.2 1 23 541 563 541 563 0.99

8 10 1.1e-05 0.0011 19.7 0.2 1 23 569 591 569 591 0.98

9 10 0.00015 0.014 16.1 4.5 1 23 597 619 597 619 0.98

10 10 0.00074 0.072 13.9 0.2 1 21 625 645 625 646 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00023	0.023	15.5	0.7	1	23	228	250	228	250	0.97
2	10	0.00043	0.042	14.7	1.3	1	23	257	280	257	280	0.97
3	10	0.00014	0.013	16.2	0.7	2	23	404	425	403	425	0.97
4	10	3.9e-06	0.00038	21.1	1.7	1	23	430	453	430	453	0.95
5	10	2.2e-05	0.0022	18.7	0.1	1	23	481	503	481	503	0.97
6	10	5.9e-07	5.7e-05	23.7	0.8	1	23	513	535	513	535	0.96
7	10	8.3e-07	8e-05	23.2	1.2	1	23	541	563	541	563	0.99
8	10	1.1e-05	0.0011	19.7	0.2	1	23	569	591	569	591	0.98
9	10	0.00015	0.014	16.1	4.5	1	23	597	619	597	619	0.98
10	10	0.00074	0.072	13.9	0.2	1	21	625	645	625	646	0.93

Sequence Information

Coding Sequence: ATGGAGCAGGTGAAGATCTACGCCGGCGGCGGGCAGGCTCACCTCCTGGTGAACGAGCTCGTCGAGAGGACCTGCAGGCTGTGCATCAGGAAACTGGACGAGGAGACCAGGCATTGGGCCCTGTTCGAGGCCGATTTGCCCCAGAAACTTATGGCTTTCGCTGCTGTACAGattcaaGAAAATGATGGGTTACCTGCAGTTATTTGTTCAAATTGTCACAGTTTAATTTACATGgcatacaattttaaatgtcaGGTAGAAAAAAGTGACCATGACTTGCGTCAAGCTCTCCTTCTAAAACAATCAACAGATTGGTCTCCTGTTCcaaatataaaatctattgaaaatataactgCAATTGAAGTCATCCTGCATGACACCCTGTcttcaaaaaaTATAGACAGTCAGACGTGCAAACCAGATGAACTTTCCTCAACAAGCAGTTCGATATTATCAGgaaatataattcataatagtaattcaatatcttttgaaatgaATAGTACTGTACCAGAAGATAAAAGTAATAGTCAAGATGCTATTGCAGAATTTGAGGCAgagtataaaatgaaaagcgaattggaagaaaaaaatcaaaaagaaaagttagatccaataaattttaaagaaaattcaaatccaaGCGAAGAAGAAAAGCCTATAATGTTACGAACAAAGCGtcataaatgtaattattgtataaaatcgTTTGCTAATTTAGCTTTGTTAGAAAAACATGCTATGGTTCATAAAAAGATAGAAACAGTTTATATTTGTCATTTATGCAATAAGCAGTTTAGTACTGttgataaagtaaaaagtcATGCTATGACAGCTCATGGAATGCATgtggaaagagaaaaaataatggagaattctaaaatgaaaagGATCACTGGttgggtaaaaaaaattggtgaaGATAATACACAACATAGTAATTCCAttgaaaatgatataaataaacaagttgATGTATTTACGTTAGAGACTGATTCTCAACCGTACGACACAGAAACTAATTccattttaacaaatttagaaaataattttcaacccACATTTGAAGAAACAAATAACAAAGACAAAACTGGTGAAGAAAGTTATATTTCTCAAGATGATAGCATGGATGAATCTGAATCAGAAGAGGAAGATGAAGATGATGACGACGAACAAGGAGAAAATGATGATATGCTTTCAGAAAATATACAGTGTAATCAATGTAATAAGCTTGTTGCAACTTTAAGGAATCTCAAAAGGCATCTCTTGACTCATTCTGGTCTCAAACACAATTGTTCAATATGCGGTAAAGATTTTTCAAGGCCTGACAAACTAAGGGAGCATCAGCAATTAAAACACAAAGAGGAACTGTTTGGAAAGTCAGATTCTGATAACGAATCTTCTGATGATAATAAGAAAAAGgaCAAAAATAATAGGCCTTTTAAGTGTTCATTATGTCCTAAAGCATTTGCCCAGCCTCAGTCATTAGCAAACCACGAGGAAAGACACAAACGAACTCGGGACGTACAGAAGCGTTACTTGTGCGAGGTTTGCAGTAAATGCTTTGCCCAGAGTGGATCTCTGGTTGCTCATATGCGTACTCACACAGGTGTGAAACCCTACGTTTGCAACGTTTGCAACAGAGCATTTACGAAAAGCACGTATCTTCAATTGCACCTCAGAACGCACAGCGGGGAAAAACCGTACATTTGCCAATATTGTAGCAGAGCATTTGCTCGAGCAAATACTCTCGCTCGGCATATAACTATGCATACAGGAGAAGCAAAGTACCATTGCCAGGTTTGCACAAAGTCTTTCCGGAGATTAACGTCTCTGAATGAACACACTTACACGCATACAGGTCAAAGACCTTATGCGTGCAAAATTTGTTCTAAAAGATACAACAATGCAGGATCATTGTATGCTCATGCAAAAAAATGCAAGGCAATGCAAGCTACGTCGGCTAATACCAATTTGGATCCCCTTTCGATTCACATTGGAGAAAACAATGTACCACCGCCAAGCGACAATAATCCTCCGCAACCGCTTCTCATTTTCACAGACAAGAATATGGATGAGGTGATAACGGATGAGGGAATAGCGGCTGAACCTCCGACATGCCAGTTCATGATTACGAATGTACCAGCTCAGAAGCCGATGCCCACTAGCAACTTGCTTGAAACGTTTATGATTCAAGAACCCGACATTTACAATATGAAcgcaaaacaatttaaaacgcCCTATTACGGATTGTATCCAAGTAtgtag
Protein Sequence: MEQVKIYAGGGQAHLLVNELVERTCRLCIRKLDEETRHWALFEADLPQKLMAFAAVQIQENDGLPAVICSNCHSLIYMAYNFKCQVEKSDHDLRQALLLKQSTDWSPVPNIKSIENITAIEVILHDTLSSKNIDSQTCKPDELSSTSSSILSGNIIHNSNSISFEMNSTVPEDKSNSQDAIAEFEAEYKMKSELEEKNQKEKLDPINFKENSNPSEEEKPIMLRTKRHKCNYCIKSFANLALLEKHAMVHKKIETVYICHLCNKQFSTVDKVKSHAMTAHGMHVEREKIMENSKMKRITGWVKKIGEDNTQHSNSIENDINKQVDVFTLETDSQPYDTETNSILTNLENNFQPTFEETNNKDKTGEESYISQDDSMDESESEEEDEDDDDEQGENDDMLSENIQCNQCNKLVATLRNLKRHLLTHSGLKHNCSICGKDFSRPDKLREHQQLKHKEELFGKSDSDNESSDDNKKKDKNNRPFKCSLCPKAFAQPQSLANHEERHKRTRDVQKRYLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCNRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQVCTKSFRRLTSLNEHTYTHTGQRPYACKICSKRYNNAGSLYAHAKKCKAMQATSANTNLDPLSIHIGENNVPPPSDNNPPQPLLIFTDKNMDEVITDEGIAAEPPTCQFMITNVPAQKPMPTSNLLETFMIQEPDIYNMNAKQFKTPYYGLYPSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01113640; iTF_01112863; iTF_01111205; iTF_01110367;
90% Identity: -
80% Identity: -