Basic Information

Insect: Ormyrus pomaceus
Gene Symbol: Dis3l2
Assembly: GCA_900474385.1
Location: UCOM01001983.1:18998-22504[-]

Transcription Factor Domain

TF Family: CSD
Domain: CSD domain
PFAM: PF00313
TF Group: Beta-Scaffold Factors
Description: In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.2 1.3e+04 -3.4 0.2 2 28 214 243 214 250 0.60

2 4 0.0018 21 5.6 0.0 11 50 292 339 286 345 0.69

3 4 3.6e-07 0.0041 17.5 0.0 30 69 394 433 387 436 0.91

4 4 0.26 3e+03 -1.3 0.0 28 46 932 950 922 951 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.2	1.3e+04	-3.4	0.2	2	28	214	243	214	250	0.60
2	4	0.0018	21	5.6	0.0	11	50	292	339	286	345	0.69
3	4	3.6e-07	0.0041	17.5	0.0	30	69	394	433	387	436	0.91
4	4	0.26	3e+03	-1.3	0.0	28	46	932	950	922	951	0.83

Sequence Information

Coding Sequence: ATGGCTGAGGGATCTTCCACGGGTCACGCGTACCAGAAGAGCCGTAGAGGCTCTCGGGCTGCGAGAAAGCCTTATTTGTTTCAGAATAATGAGGATGTTGACCAGACTCCCAAAATTATCATTCCGAAGAGGCCTCCAAGAAGGCCAAAAGTGCCAAAACCATCTTCCGATGAAGTTGTTCAGTGTAATGAAACCATTCCAGTTACACAATACAATGGCttcatttataaaagcaaTGAAGTTAGCCCTACTCATAGTGTTGAGAACAATCAACAAGTACCTCCAATAGCAATGTCTTTCGAAGAAATTGAAGAGAGAATGTCTTCTCTGAGATTGAGCCAGGAGTCCtttgatgatgatgatATAACAGAAAGTACCTTATCAACACCGGAGAAAACAGTGAGTAAAAGtgctaaaaagaaattaagaagaagggctaaaaagaaaaataaaaatattgatgtgttttctgaaaatattgaatcaaAAAGTCCTGATTCTGCTGAAGGTAGCACAAGTACTGATGAAAATGTTCAagaagttgaaataaaaagagaaaaagaagaaaagccaAAACTTTATTACACTCATAGAAGTACaagtaaaatacataaaaatgaacaaGGTACATCTCAAGAAGTTACATGTACACAGAAAAAATtggaacaaaaagaaaaaattgcaaagaaacaaaaagaaatgaaacagaagaagaaaagggggaaaaaagtatttaatgaaCATATACCTCATGATGTAGTTAAGAGAATTTTAGCTGCTCAGGATCCTGAGAATCCTAAGACAATTGAGGGTTACATTCGTATAAATCCTAGGTGTAGTCAAAATGCAtatgtttcattaaataacGGTGAGCAAGATATATTGATTGTTGGTTTGAAGAATCGAAATCGAGCACTTGAAGGAGATTTAGTTGCTGTCACCATAAATACTAAAGATAAATGGTACCAGATGACTGAAAATACCTGGCAAAAAACAGGAGCAGTAGTAAGCATTCTAGAAAAGTTTCATCCAAGAAAGACAGTTGGTTTTCTTCAAAAGCAGGATGTTTTTGTATTCCTCAAACCTAGAGATCTAAGGGTaccaataatgaaaattaatccAAAAACTGTACCCAgacatttttatgataatcctgaacttttcaaagaaacattatttttatgcaatattatAGACTGGAAAACAGTTGCCTTTGCTGAagggGAAATTCAGCAAATTGTTGGTACAAAAGGAGACTTAAGTGTCGAAACAAACgctattttattagaaaatgatttgGTTTTGGAGCCATATAAAAACGAATTATTAAGAGATCTTCCACCCCCTGATTATGTTCCAACAGCTTCAGACATTATAGAGAGAGAAGACttaagaaaatattgcatttttacaATAGATCCTGCCACAGCTGTTGACTTAGATGATGCAATgtcttgtaaaaaattaaaaaatgggaATTATGAGGTTGGTGTACATATAGCGGACGTAACCCATTTCTTAACAGCATTTTCGCCTTTAGATAAAAAAGTAGCAGAAAGAGCTACTACTGTGTATATGGTTGACAACGTGTATCACATGCTACCGCATCAATTATGTTTAGCTTGTTCGTTACTACCTGGCAAAGATAAATTAGCGTTTTCTGTTATTTTGGAAATGACTCCTACAGCAGACGTAGTTAATCGCCGTTTTTCTAAGACTGTGATAAACTCTTGTTGTCAGATGTCGTATGATCAAGCACAAATTATGATCGATAACGAGTTTTACGATTGGAAAAGTGATAATTCCTTGAAAATAGCTGGGAAGTATGAACCGGCTCATTTAGTCAATGTAGTTAGGGAACTACATGGTTTATCGACACAATTAAGAAAGAAACGATTTGACGAGGGTGCGCTTAGAATCGATCAACCAAAATTATGCGTTATTTTAGACAAAGAAACAAAACTGcctatttcttattttcttgacgaaagaaaagaaagtaatAGccTCATTGAAGAATTTATGTTATTAGCAAATATGACTGTTGCAAAACATTTGTACGAAACCTTACCCAATGTATCCTTGTTAAGATCCCATGCTGAGCCTTCTATGCGACTTCTTGCAAAAACTAGAGATTTACTTACTAAGTTCGGTGTGCTCCTTGACGTAGATTCAGCTGGAGCTTTGCATAATAGCTTACTTATGTATCAATCTATTGAAAATGACACTGGTTATAATTCAGAAGTAGCTCAGTATAGAATGATGGTTATCAATAATCTTTGTGCCAAATCCATGacgCGCGCAGTATACAAATGTTCTGCATCAGTTAGGGAGAAAGAGCATTTAAGGCATTATGCATTAAATGCTGATTATTATACTCACTTCACATCGCCGATAAGAAGATACCCTGATTGTGTAGTTCACAGATTGCTATATGCATCGATTAAAAATCACCCTTTATCCAGTGAGTGGTCATCAGCAGTTTGCGAAaaGATAGCGTCTAACTGCAATACTAAAAAGTATTCAGCAAAAATGGCACAAGAACAAAGCAATGCTTTATACTTTACTTACATGCTCGACCTTAAGGGGTGGATGAATTCCGTAGCAGTTGTTATGGATGTAAAAGAACGATCAGCAGATGCAATGTTGTGCGATACAGGTATTAAGATTCGCGTTTATTTCACTGACACAATTGAAGAGACTACTTTTGAATTTGCAATAGAGCATGAAGTTCCAACCGTTAGACTCACTTGGATTGAAAGGAAAATCACACAAgtaatAAACACTTTTAGTATATTGcatgtaaaaataacaaagcatCCACAGTTGTACAGAGTACAAGGGATTATTTTGCCACCAGTAAATATTGatgtaaattaa
Protein Sequence: MAEGSSTGHAYQKSRRGSRAARKPYLFQNNEDVDQTPKIIIPKRPPRRPKVPKPSSDEVVQCNETIPVTQYNGFIYKSNEVSPTHSVENNQQVPPIAMSFEEIEERMSSLRLSQESFDDDDITESTLSTPEKTVSKSAKKKLRRRAKKKNKNIDVFSENIESKSPDSAEGSTSTDENVQEVEIKREKEEKPKLYYTHRSTSKIHKNEQGTSQEVTCTQKKLEQKEKIAKKQKEMKQKKKRGKKVFNEHIPHDVVKRILAAQDPENPKTIEGYIRINPRCSQNAYVSLNNGEQDILIVGLKNRNRALEGDLVAVTINTKDKWYQMTENTWQKTGAVVSILEKFHPRKTVGFLQKQDVFVFLKPRDLRVPIMKINPKTVPRHFYDNPELFKETLFLCNIIDWKTVAFAEGEIQQIVGTKGDLSVETNAILLENDLVLEPYKNELLRDLPPPDYVPTASDIIEREDLRKYCIFTIDPATAVDLDDAMSCKKLKNGNYEVGVHIADVTHFLTAFSPLDKKVAERATTVYMVDNVYHMLPHQLCLACSLLPGKDKLAFSVILEMTPTADVVNRRFSKTVINSCCQMSYDQAQIMIDNEFYDWKSDNSLKIAGKYEPAHLVNVVRELHGLSTQLRKKRFDEGALRIDQPKLCVILDKETKLPISYFLDERKESNSLIEEFMLLANMTVAKHLYETLPNVSLLRSHAEPSMRLLAKTRDLLTKFGVLLDVDSAGALHNSLLMYQSIENDTGYNSEVAQYRMMVINNLCAKSMTRAVYKCSASVREKEHLRHYALNADYYTHFTSPIRRYPDCVVHRLLYASIKNHPLSSEWSSAVCEKIASNCNTKKYSAKMAQEQSNALYFTYMLDLKGWMNSVAVVMDVKERSADAMLCDTGIKIRVYFTDTIEETTFEFAIEHEVPTVRLTWIERKITQVINTFSILHVKITKHPQLYRVQGIILPPVNIDVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01110691;
90% Identity: iTF_01113189;
80% Identity: -