Onit027193.1
Basic Information
- Insect
- Ormyrus nitidulus
- Gene Symbol
- -
- Assembly
- GCA_900474335.1
- Location
- UCOL01002565.1:6918-12656[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.039 5.1 8.5 0.2 1 23 853 876 853 876 0.95 2 13 0.012 1.5 10.2 0.8 2 21 887 906 886 907 0.95 3 13 0.0035 0.46 11.8 0.9 2 23 915 937 914 937 0.96 4 13 0.0061 0.8 11.0 0.6 2 21 1022 1041 1021 1042 0.93 5 13 0.0035 0.45 11.8 3.0 3 23 1054 1075 1052 1075 0.95 6 13 0.0014 0.19 13.0 0.7 2 20 1085 1103 1084 1105 0.93 7 13 0.044 5.8 8.3 3.9 2 23 1113 1135 1112 1135 0.94 8 13 5.3 7e+02 1.8 3.0 1 23 1229 1252 1229 1252 0.95 9 13 0.0081 1.1 10.6 2.2 1 21 1257 1277 1257 1278 0.94 10 13 0.41 54 5.3 4.1 2 22 1286 1306 1285 1306 0.94 11 13 0.12 16 6.9 0.2 2 21 1324 1343 1323 1344 0.91 12 13 0.056 7.3 8.0 5.7 2 23 1353 1375 1352 1375 0.96 13 13 0.58 76 4.8 0.8 1 21 1386 1406 1386 1407 0.93
Sequence Information
- Coding Sequence
- atGCCTTACCATCATCATAATACTATGATCTCACCAGTGGttgtTTTGGAAAGACTTCCTATACAATTCAAACAAAACAATTGCCTTAAAGAATTTAGAATTCCAAAAACAGaaaatgaattaaatcacagcaataaaaatagcttaaaattaaaaaaaatgaaaaagaaatcaacaagatttaaaagaaacctTACAAATGTTTCAAATCATTCAGTAACACaaaaatcaaattacaatgataaaaatactttaattggaaaaatggaagctaaactattaaattttaagaaagcccatacaaaaagaaatgtatCTACAAACTCaggtGTATATAGAttgaggagaaaaaaaattttaccaaatgCTGATAAACAACTAACCATTATGAAATCACCAATAGTTGTTTTGGAAAGACTTCCTATAGAtgtgaaactaaaaatattgcgaaataaacaaataataattcctaATCGATTTGGAAGTATCAATAAGTGCAAgatgttttcaaatattttagaagaaaatataaaaaatgaaaacgtaaTGAATGTTGATGAGAATATCAATgtgatgaataaaaatgtcatcaaaacaaaaaagagaattaaaaatttaaaaaaagctaagagcaatattggaaaaaaaattagaaataatacaaaaaacgaagatgagattataaataatagaaacaatgATACTCAAATGATACgtttaattataactaaagAATCATCaactaaagaattaaaagtgcAAGATGTTACTACTGAAATGCAACatgttaaagatattttaacaGTAACTGAGTATGGAAAACAGATACAAACAGATGCTGATTTGATTATGCAAGTTGCAACAAAAGAATCATTTTCTAAAGAACTAGAAGAAGTACAAGATGTTACAACTAAAATAGAATATGTTAAAGATACTCTAACTGAGAGTAGAAAACAAATGCAAACAGATTCTATGATCCTTTCAGTTGTAACTAAGAAATTATTGGCTAAAGAACTGGAAGAAGTGCAAGATGTTACAACTGAAATGGAACATGTTAAAGGTATTCCAACAATAACTGAGAATAGGAAACAAATACAAACAGACACTGGTTTGATTATTCCAGTTGTAACTAAAGAAACATTGGCTAAAGAACTGGAAGAAGTACAAGATGTTACAACTGAAATGGAACATGTTAAAGGTATTCCAACAATAACTGAGAATTGGAAGCAAATACAAACAGGCACTGGATTGATTATTCCAGTTGTAACTAAAGGAACATTGGCTAAAGAACTGGAAGAAGTACAAGATGTTACAATTGAAATGGAACATGCTaaagatattgtaaaaataagtgaGAATAGGGAACAATTACAAGTAGACGTAGAAGATAGTAATGatGAAAAATCGGTTGATATTTCTAAGGAAGATTtgattgttgaaaataattcaaaatataaacgtcttaatcattttatagacaatgaaaaaatagagATGCAATCTCTAACTGATAAGGacagaattaaaaacttacatgGGATAgatcaaaatacaaataatgaagaaaatgataaacaaaaaattgaagaacaaatagaaattaatttagaaactgatataaatgtaaacataGTAGCTgagtcaaatttaaattctgaagGAAATTCTTTATCTAATGATGAAATAGTTTCAACAGAAGAAAGGTCAATTCTCGAGTTAAATGAAACTAATACAATTAAAGATAATGTATTAGttcatatttcaaatgaaaacatAACTGTAAATGATAACTTAGACATTGCAAGAATTGCCTTTTCGGAATATAATGGAGTGCCTACAGAGAAACCTTCAATTTTTGACATAAACGAAATGAACAAAAGCGAAGATAATGTTGCTAGCGCGTTAGTAATAAAACACGAAATTATTGAACAAGCGCTAGTTGACTCAAATATCAGTGatgacggggaaattgaaaatttatgtacgaAGTTAACTGCTACCTCGCACTCTAAAAAAGGCATTCATACTGGAGaaacaaacgaaaataattttcatcagTCACGCGATAATGAGACTGATATTTTAACTGGCGATTTGATTATAGACGaacatattgaaaaaatagaaataaacgaaaatgaaGATGATTTGTCATGTAATAGTGAAATctatgaagaagaaaatactaatttaagtCGTgTCATTGATGCTACAAATGATGAAACAATGTGCAATAACGCGGAGTTGGGTAAAAGCAAATCAATTAGTTTAGAGCAAGTGTGTAAACAGATGTCAATTTCagGATTACAGatgtttgaaaaacattttgatgCAAATGAATGGTCATATATTTCTGAAGAATCTGatGTACCATACGAATTCGTTGATATTCAAtctgttaataaaagtaatacaaaTGGAACAGCTCCAAGTAGTAAAAGTAGaaGATCaaacatgaaattttatcGAGAAATTTGCATGAATTGCAACAAAGTAcaagaaagaattaataacAAGGCTCTAAGTAAGTGCCAGACTTGTCAAGAAGATGTATATTATGCGTGTGTAGAATGCAATAAAGAGTACAAATATATATCTGGAGTATATAAACACGTAATGGTAAACCATACGAAAAATGAGAACCGTCCAAAACCTATTAAATGTTTGAGATGTGGCAGAGAGTTTAAAATGTCGTTTAATATGAAGGATCACTTGAGATTTTGCATGTTAGATGCATGCATACAATGTCCATTTTGTCCATTAAAGACGAAACGTAAATCTTCTGCAAGAAAGCATTTATTAAGAATGCATAGTCGTAAATTTAATGTGGAAGAAATTGAAGATGTGCTTGAAAAAGTTGTTGAAAACTCGAAAGAGCTTAGAGataaAGCTGAGCAAAAATTAACCAATCAGTTTGGTAGTTCCCCGACTACCTCTCGATTGCGTCCTTTTCCTATCCGCAACTACATACAGCTCTATTGTGATCAGTGCAAGATAGTAATCAAGAAACAGAGCGGTAAGGACCAGCGTAGCTGCTTAAATTGTCGTACCAAACTGCAACTTGAGTGCAGAAAATGTGGTCGACGCTACAAGTATCGCAGCAGCATGTCAGTTCATTTGCAGAATCAGTGCCTGCGAACGGAGCCGATAGTTATAAATTGCGACCAATGCGAGTACGTTACCTGCACCAAGTCTCGGCTCACGAGACACATCCAGCGGCGACACGCGTTCATTCTGCCTAGTGAATATGTTACGTGCAATAGATGTCAGAAGAGTTTTAGGCTGAAGGAAGATTTGAGGAACCACAAGTACATCTGTGGGAAGATTCCACACCTGCACTGCGAGTTTTGCGATTACAGGGCAAAGCATAAGAGTTTACTGAGGTCTCACATTGACAGTAAGCATCCAGAGACGAGAATGGGTATTATTCAGCCGACGAAGAACAATGTTGGAGATGAGGGAGAAATCATTAGTGAGAGTATAGaaattttagaattcaaaACGGAAAGCGGGTTGGATATCACACCCAATATCATTAACGCTTCAGCAATTTTGTCAttcgaagaaaatttacaatcgcAATTTATATCCGACTCTATCAAAGCCTGCTGCACGAACTGCAACTTAGAAATCCGAGCAATGGAGAAGATAACAAAATGCCAGGTGTGCTGCACACCGTTCATCTACTGTTGCACCCGGTGCAATCAAATTCGTCGCAACTTCATCCTTTTACGTCTCCATGTGATCCGCAAACACAGCGAGAAAACACATCACTGTCCGTCCTGTGAACGCAGTTTCTCCTACGAGAATGACTACCGACAGCAccaaaaaatttgcaatctaGCGCCGTATCTTCACTGTCATCGCTGTTCATTTCAAACCAAATACAAAAGCACCTTCCAGGCGCACATCAGACGCGGAACTTGCGTGGTAAATCAAAAACTGATTGTACGAAAGCGCGATAGAGTTTACTGTTATAAGTGCGGAAAAGATTTCGGGTCTCAGCTGATGATGTCGAAGCACGTCAATCGGTGCGGATTGTCTAAGAAAATACTCAGTTGTAgtcattgtaattttatgactGCGCATAAGCACCTGCTTATTAATCATATCCAATCTAAACATGCTTCTAGGCTGTTTAGAAATGTTGATGCCTTTCAGTGTAGCGCTTGCACGCTAATGTTCAAGAACTACTTCGTGTACAGTAGACATATTGAGAAAAGAAAGTgccgcgaaaagaaaaagtaa
- Protein Sequence
- MPYHHHNTMISPVVVLERLPIQFKQNNCLKEFRIPKTENELNHSNKNSLKLKKMKKKSTRFKRNLTNVSNHSVTQKSNYNDKNTLIGKMEAKLLNFKKAHTKRNVSTNSGVYRLRRKKILPNADKQLTIMKSPIVVLERLPIDVKLKILRNKQIIIPNRFGSINKCKMFSNILEENIKNENVMNVDENINVMNKNVIKTKKRIKNLKKAKSNIGKKIRNNTKNEDEIINNRNNDTQMIRLIITKESSTKELKVQDVTTEMQHVKDILTVTEYGKQIQTDADLIMQVATKESFSKELEEVQDVTTKIEYVKDTLTESRKQMQTDSMILSVVTKKLLAKELEEVQDVTTEMEHVKGIPTITENRKQIQTDTGLIIPVVTKETLAKELEEVQDVTTEMEHVKGIPTITENWKQIQTGTGLIIPVVTKGTLAKELEEVQDVTIEMEHAKDIVKISENREQLQVDVEDSNDEKSVDISKEDLIVENNSKYKRLNHFIDNEKIEMQSLTDKDRIKNLHGIDQNTNNEENDKQKIEEQIEINLETDINVNIVAESNLNSEGNSLSNDEIVSTEERSILELNETNTIKDNVLVHISNENITVNDNLDIARIAFSEYNGVPTEKPSIFDINEMNKSEDNVASALVIKHEIIEQALVDSNISDDGEIENLCTKLTATSHSKKGIHTGETNENNFHQSRDNETDILTGDLIIDEHIEKIEINENEDDLSCNSEIYEEENTNLSRVIDATNDETMCNNAELGKSKSISLEQVCKQMSISGLQMFEKHFDANEWSYISEESDVPYEFVDIQSVNKSNTNGTAPSSKSRRSNMKFYREICMNCNKVQERINNKALSKCQTCQEDVYYACVECNKEYKYISGVYKHVMVNHTKNENRPKPIKCLRCGREFKMSFNMKDHLRFCMLDACIQCPFCPLKTKRKSSARKHLLRMHSRKFNVEEIEDVLEKVVENSKELRDKAEQKLTNQFGSSPTTSRLRPFPIRNYIQLYCDQCKIVIKKQSGKDQRSCLNCRTKLQLECRKCGRRYKYRSSMSVHLQNQCLRTEPIVINCDQCEYVTCTKSRLTRHIQRRHAFILPSEYVTCNRCQKSFRLKEDLRNHKYICGKIPHLHCEFCDYRAKHKSLLRSHIDSKHPETRMGIIQPTKNNVGDEGEIISESIEILEFKTESGLDITPNIINASAILSFEENLQSQFISDSIKACCTNCNLEIRAMEKITKCQVCCTPFIYCCTRCNQIRRNFILLRLHVIRKHSEKTHHCPSCERSFSYENDYRQHQKICNLAPYLHCHRCSFQTKYKSTFQAHIRRGTCVVNQKLIVRKRDRVYCYKCGKDFGSQLMMSKHVNRCGLSKKILSCSHCNFMTAHKHLLINHIQSKHASRLFRNVDAFQCSACTLMFKNYFVYSRHIEKRKCREKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01112147;
- 90% Identity
- iTF_01112147;
- 80% Identity
- -