Basic Information

Insect: Ormyrus nitidulus
Gene Symbol: -
Assembly: GCA_900474335.1
Location: UCOL01000308.1:925-5331[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00017 0.023 15.9 2.9 1 23 343 365 343 365 0.98

2 18 0.077 10 7.6 1.5 2 23 411 432 411 432 0.95

3 18 0.00043 0.056 14.7 0.3 2 23 494 515 493 515 0.97

4 18 6.9e-06 0.00091 20.3 2.7 1 23 559 581 559 581 0.99

5 18 3.8e-05 0.005 18.0 8.6 1 23 586 608 586 609 0.96

6 18 0.002 0.27 12.5 0.8 1 21 615 635 615 639 0.92

7 18 0.019 2.5 9.5 4.1 2 23 719 740 718 740 0.96

8 18 7.9e-05 0.01 17.0 3.5 1 23 788 810 788 810 0.97

9 18 0.00028 0.037 15.2 0.7 1 20 815 834 815 836 0.94

10 18 0.17 22 6.5 0.2 2 23 847 868 847 868 0.97

11 18 1.3e-05 0.0017 19.4 0.7 2 23 906 927 905 927 0.97

12 18 9.1e-05 0.012 16.8 1.8 1 23 932 954 932 954 0.95

13 18 1.7e-05 0.0023 19.1 1.4 1 23 960 982 960 982 0.99

14 18 4.6e-06 0.00061 20.8 0.4 1 23 998 1020 998 1020 0.95

15 18 3.8e-07 4.9e-05 24.3 0.6 1 23 1026 1048 1026 1048 0.99

16 18 4.1e-05 0.0053 17.9 0.2 1 23 1054 1076 1054 1076 0.97

17 18 0.00015 0.02 16.1 4.1 1 23 1082 1104 1082 1104 0.96

18 18 0.0064 0.84 11.0 0.7 1 20 1110 1129 1110 1131 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00017	0.023	15.9	2.9	1	23	343	365	343	365	0.98
2	18	0.077	10	7.6	1.5	2	23	411	432	411	432	0.95
3	18	0.00043	0.056	14.7	0.3	2	23	494	515	493	515	0.97
4	18	6.9e-06	0.00091	20.3	2.7	1	23	559	581	559	581	0.99
5	18	3.8e-05	0.005	18.0	8.6	1	23	586	608	586	609	0.96
6	18	0.002	0.27	12.5	0.8	1	21	615	635	615	639	0.92
7	18	0.019	2.5	9.5	4.1	2	23	719	740	718	740	0.96
8	18	7.9e-05	0.01	17.0	3.5	1	23	788	810	788	810	0.97
9	18	0.00028	0.037	15.2	0.7	1	20	815	834	815	836	0.94
10	18	0.17	22	6.5	0.2	2	23	847	868	847	868	0.97
11	18	1.3e-05	0.0017	19.4	0.7	2	23	906	927	905	927	0.97
12	18	9.1e-05	0.012	16.8	1.8	1	23	932	954	932	954	0.95
13	18	1.7e-05	0.0023	19.1	1.4	1	23	960	982	960	982	0.99
14	18	4.6e-06	0.00061	20.8	0.4	1	23	998	1020	998	1020	0.95
15	18	3.8e-07	4.9e-05	24.3	0.6	1	23	1026	1048	1026	1048	0.99
16	18	4.1e-05	0.0053	17.9	0.2	1	23	1054	1076	1054	1076	0.97
17	18	0.00015	0.02	16.1	4.1	1	23	1082	1104	1082	1104	0.96
18	18	0.0064	0.84	11.0	0.7	1	20	1110	1129	1110	1131	0.90

Sequence Information

Coding Sequence: ATGGACGCCGTCGGAGTGGACACGTCGGGCGAGCCGCGGCCGCAGCAGCCGCAGGTCCTCGAGCTCTGCCGCATCTGCCTGCTCGGCAGCACGGCGATGCGCGGCCTCTTCCCCGAGGACGACGGACCCAGCCTCGCTCACAAGGCCATGAGCTTCGCCAGTGTTAAGattttgccAGGAGATGGATTGCCTTCTCATATTTGCTGTGATTGTAGTGATAAACTTGACTCTGCTTACAAGTTCAAATTACAAGTTGAACAAGCTGATAATGTATTGCGAGAAAGACTGGATTCTTTAAACATAAAGGAAGAACTCTTTTTTAGCGATGTAGATGTAAATTTGTCAGCCCACAGAAATGATGTTGGAGAAATCACTgcagaaagtttaattttaaaagatcacCACATGCACatggatttattaaatgtacaaaaaaaaatatacaatggACAAGATATACTGCATCATCAGAGGGATGATTTAGAAACacaaaatgataatattgGTATACATCAACATGAGGAAGTACAAAAAACTGAAGATGAGGAGCAGttgcaaattaataatgaaaaagatgttattgttaataataaccAAGAGATTGAAATGCAACAAATGTCAAGTGAACAAGCAAACCAAGCATTTGAAGCCCAGGAAATACAGGAAATGATGCTCAATGATATAAATGATCAAGAAAGAATGCAAAAGGACATGAATCATGCTCAACAGTTGGCAATGCATGAACATAATTATGTAGCAGAATCATCTGATTTTGCTAATGTAAATGATGTACAGAATTCAGagCAACTTGAACATGAGACTAAagaagatattgaaaaagaatcatTGAATGAAGAAACATACGATGCATCAGTTGAGTCCACAGGCAATGAATCTATTCGTCGAAGCAAACGTAGAATTAGTCAACGAAAATCTCAGGTGAATTGCGATTCAGATGAAGAAAACTACTTTGAAAATCTTAATCTTAGTTCTAGATTGAAAAAAGTGCAATCgcagaaagtttattttatgtgTTACTTATgtgaaaaacaatttgtatCAAAGGAAATGTTAAAGGAGCACATGCATACTCACGAAGAAGTTAGAAAAACGCTTTCtcttactaataaaaaacCTGCGGAGAAGTTACCGAAATCACCTGAAAAGCCTCAAGATACTTCAGTAAACTTATCACCAGCAAAATCACCATCAAGTGGTAAAAAGCCAAATACTTGTCCTCATTGTGGAAAAGAATACCTGTACATTATATCATTCAATAAGCATTTAAAACAGCATGAAAAAGCACAGGCAAAGGATGAATCTATGCCTTTAGAAGTTTCCTTTGAAGAGGATGATGATGCTTTAGATTTTCATGATTATGATGAAAACCCTACTGTAGGTTCTGATAGTGAAgaagatgaaataaaagaagaaaatcaagTTCAGATAAAGCAGGAATTTACAAAGCAAAATTCCATTAAGTGCAACGTTTGCGAAGAAGAATTTGATTCTGctgataaactaaaaaatcatcGAGCAAAGCACGTTATGGAGGGTGTGCTTAGTGAACAAAATGATGAACAGTTAGATTCAGGTCTTataaacgaaaatgaaaacaaagatgaaatcaattttgaagaatctacatttttgaaaaaagaagatgTTAAGGAATTTAAATGTCCTCACTGTCCAGTGGTATATTCtcacaaaaaaagtttagctCGTCATTTAGAAACTCATTCTTCTGTTAAATACACATGTAAATTATGTACTCAGTCGTTTAGTCGTAAGGATCATTTGCGACATCACATTGAACGGCACCATGTTCGTCAAAAAAGCTTCAAATGCACGCaatgtaataaaagctttGGCAATGATTTGACTTTAAGAAATCATTTGATAGCTACTAATCATAAAACGATCGTGCAAGGTCAGGAATATGATCCTAATAAAAGGATTAAGAGAGTAGCAGCAAAAGCagcgcaaaaaattattgataagatTAAAACTGATCTTAATATGgatgaagaagaggaagaggaggaggaaactgaaagagaaaaagatagAGACTTCATGTTTGCCAAAGAAGAATTTGAGATTCCTGATGGTGTAAAgACTTCTAAAAAGCTTCCacgtaataaaactttaacttGTGCAACTTGTAATCATAAATGTCCAACAAAACAAGCTCTTACAAAACACATGGAGCAACACGTAAAGGACGAAAATGTAGTCAAGCAAGAAAAGAATGTAGCTCAAAAATCTGAAGAAACccaagaaaaagaagagaacgAAATTGACCATGAAGAAGATGACGATGATTTTGAAGGTGGCCTTGATTGGCCAATGGATAGCCACGAGTGCCCAACGTGCAAAAAACAATACAGCACGAAAAAATCTCTGCTTCGTCATCAACTACTTCATGAGGAACCAAATTTCGAGTGCGATATCTGTAATGTcaagttttatagaaaagatAAACTTAAAGCTCATTACGACAAGTGCTCCGAGAAAAATCCAGATCAAGTGCGAAAGTGTAATATTTGCGgcgatatttttgaaaacaacgaaattttgaaagagcaTCGAGCGAAACATGTAATGGAAGGTATACTCACAGAGGAGGATCTTCGAGAAATTGAACCCAGACCAGAGGATCGGAATGGAGAAAAAGCACCGCGAAAGAGGCGCACAGACATTGTTGGACTGGAATGTACAGAATGTAATAAACGTTATACTTCGAGGAAAGGTCTTTTAAGGCACATACAGgTTCATGAGGGTAAAAAGTACTTGTGTGATTTATGTCCAAAGAAATTCTACAGGAGAGagcatttgaaaattcacgTAGCCAAACACAATATGATTAAACCGTACAAGTGTCCTCGATGTTCAAAACGTTTCATTAAAGAGGagcaattaaataatcatataaGCAAACATGACAAAACATTCAAAAAGGCTAAAGAATCGGATACATCAAAGAGATTTTTGTGTGAAATATGTTCGAAGAGTTTCACGCAATCCACGACACTTATTGCACATTTGAGAGCTCACAATGGCATAAAACCGTACGTTTGCGAAGTCTGCTCCAGGCCTTTCACGACAAACGCTTACTTGAAAATGCATATGAGAACGCACACTCAGGAACGTCCCTACATTTGTCAGTATTGTTCTAGAGCTTTTGCGAGAGCTGATACTTTGGCCAACCACTTAACTTCGCATACCGGCGAGGCTAAGTATCACTGTAAGTACTGTCCGAAGAATTTCAGAAGATTGAAATCGCTCAAAGAGCACGTCTTTATTCACACTGGCCAGCGCCCTTATTCTTGTCCCACCTGCGATAGAAGATTCAATAATAACGGAAGCAGATATGCGCATAGCAAGAGATGTAAGCAAAATCTGTTGCAGAACAGGACAAATCAGATTACTGTGCAACCACTTACTGTTGAACAGGAACCTCTGACCGCTGAGCAAGAACAAGAAGAACAAGAACACCTACAATTACAGGAACAGCAGCATCAACAGCTGCAGGAGCAACATTTGCAGTTGCAAACTCAAAGGATACATCAAGCAACGATAAGCCAGGCTCAGGTCATAAAACCACAAAATGTGAAAACGATCACAATTACGAGGCAAGACGGAGGATTAACTCAGCAGCACGTGATGACGCATCAAGAGATACTTATGCCCTTGATACTTCCGTTAACAGTGACACTCACAGACGTAGGAGATGAGACTATTCTTCCCGAAGGcacgaaaatttttacgacGTAA
Protein Sequence: MDAVGVDTSGEPRPQQPQVLELCRICLLGSTAMRGLFPEDDGPSLAHKAMSFASVKILPGDGLPSHICCDCSDKLDSAYKFKLQVEQADNVLRERLDSLNIKEELFFSDVDVNLSAHRNDVGEITAESLILKDHHMHMDLLNVQKKIYNGQDILHHQRDDLETQNDNIGIHQHEEVQKTEDEEQLQINNEKDVIVNNNQEIEMQQMSSEQANQAFEAQEIQEMMLNDINDQERMQKDMNHAQQLAMHEHNYVAESSDFANVNDVQNSEQLEHETKEDIEKESLNEETYDASVESTGNESIRRSKRRISQRKSQVNCDSDEENYFENLNLSSRLKKVQSQKVYFMCYLCEKQFVSKEMLKEHMHTHEEVRKTLSLTNKKPAEKLPKSPEKPQDTSVNLSPAKSPSSGKKPNTCPHCGKEYLYIISFNKHLKQHEKAQAKDESMPLEVSFEEDDDALDFHDYDENPTVGSDSEEDEIKEENQVQIKQEFTKQNSIKCNVCEEEFDSADKLKNHRAKHVMEGVLSEQNDEQLDSGLINENENKDEINFEESTFLKKEDVKEFKCPHCPVVYSHKKSLARHLETHSSVKYTCKLCTQSFSRKDHLRHHIERHHVRQKSFKCTQCNKSFGNDLTLRNHLIATNHKTIVQGQEYDPNKRIKRVAAKAAQKIIDKIKTDLNMDEEEEEEEETEREKDRDFMFAKEEFEIPDGVKTSKKLPRNKTLTCATCNHKCPTKQALTKHMEQHVKDENVVKQEKNVAQKSEETQEKEENEIDHEEDDDDFEGGLDWPMDSHECPTCKKQYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDIFENNEILKEHRAKHVMEGILTEEDLREIEPRPEDRNGEKAPRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDLCPKKFYRREHLKIHVAKHNMIKPYKCPRCSKRFIKEEQLNNHISKHDKTFKKAKESDTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYSCPTCDRRFNNNGSRYAHSKRCKQNLLQNRTNQITVQPLTVEQEPLTAEQEQEEQEHLQLQEQQHQQLQEQHLQLQTQRIHQATISQAQVIKPQNVKTITITRQDGGLTQQHVMTHQEILMPLILPLTVTLTDVGDETILPEGTKIFTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01113633;
90% Identity: iTF_01113633;
80% Identity: -