Onit025892.1
Basic Information
- Insect
- Ormyrus nitidulus
- Gene Symbol
- -
- Assembly
- GCA_900474335.1
- Location
- UCOL01000230.1:26259-29390[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-09 7.5e-06 26.3 0.2 5 37 1 32 1 36 0.93 2 2 0.00069 1.1 9.8 0.1 4 30 278 303 276 313 0.86
Sequence Information
- Coding Sequence
- ATGAAGGCTGCCTTGACCGCCTTGAATCAGGGGATGTCGTTCAGAAAGGTTGCCAAGTACTACGGTATTACCAAGTCGACGCTGCAGCGCATCAAAGCTCAGCAACGAGCGAATGCCGGAGGAGGATTTATCGCCACTGTTCAAGTCGAGATTGATCatttatgGTTTTTAGGGAAAAAAGTTCTcgaattttacatatttatgcaCTTCCATACCGATAACTTAGATAAGCGAAATTCTAACGTCATTATACTCGAGGATGAAAGCGTCATTATTAAGCAAGAACCTGGTAAAAGTGATGAAAATGTTAAGATTAAACAAAGATTAAAGCGCAAATTAGAAGAAGAcagcttaaaaatgaaagaatccTCAGATACCGAGGAGGGACACATCATTTTCATCAAACAGGAGGACGTTTCTTACGAGGACGAAGACGAATATGATCTTGACTTTGTCGACGTGGAAGACGTAAACCTTGAAGCAGAAGATGAAGATACTCTAAGAAATTCAAACGAAACAGAAGATGCAGATCTGATAGATGTTGAAGATGAATTAGAATTAGGAGAATTAAGAGcaacaaataagaaaaaaccTACCCCCAAGCAAGCCTCCAGAACAAACGAAGAAGTTAGAATAGCCGAAGGGACGCCCGAAAAGATCGCCTACAAAGTGGTGACGCCCACGACTCGCTTGAACCTCGACACGTTCGAGGGTTGGTGCATGCGGAACGTCGGCGGCGTCAAGAAAGCGGTGCAGTACAATACGCCAAGGAGGCCGAGGAGCAGAGCTTTCTCTGGTCCGAAGCCCGATTTGATATATCGCATGACGGCGAACCTGCGGATGGCTCTGGAGGCCGTCGACAAGGGCATGGCTTACGACGACGCGTCGAGGGCTTACGGGATATCCGAGGCCAGGCTGCGCAGTATTAAGGAGCTCGAGGCCGCGAATCCTGCTTACATTCTGCACCCTGCCATTTGGCACCCGGCCACGGGGAAAAAATACTGCTGCTTGTCCTGCGGCAGAGGCTACAAGGTGCAGCGCTCGCTGAGGAGGCATCTGAGGGTCGAGTGCGGCAAGGACCCCAAGCACAAGTGTCCCTACTGCGACCACTGGACGAAGTATCGGGCGAGCATACTGAAGCACGTGACGCACATCCACCCCAACTTGCCGTACGAAGGGGCTGGCATTCAGGCCCTCGATGCCCGGCTGGAGTGA
- Protein Sequence
- MKAALTALNQGMSFRKVAKYYGITKSTLQRIKAQQRANAGGGFIATVQVEIDHLWFLGKKVLEFYIFMHFHTDNLDKRNSNVIILEDESVIIKQEPGKSDENVKIKQRLKRKLEEDSLKMKESSDTEEGHIIFIKQEDVSYEDEDEYDLDFVDVEDVNLEAEDEDTLRNSNETEDADLIDVEDELELGELRATNKKKPTPKQASRTNEEVRIAEGTPEKIAYKVVTPTTRLNLDTFEGWCMRNVGGVKKAVQYNTPRRPRSRAFSGPKPDLIYRMTANLRMALEAVDKGMAYDDASRAYGISEARLRSIKELEAANPAYILHPAIWHPATGKKYCCLSCGRGYKVQRSLRRHLRVECGKDPKHKCPYCDHWTKYRASILKHVTHIHPNLPYEGAGIQALDARLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01110026;
- 90% Identity
- -
- 80% Identity
- -