Ooch010011.2
Basic Information
- Insect
- Ormia ochracea
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963402855.1
- Location
- OY727107.1:55796871-55803999[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.021 2e+02 1.1 6.3 60 112 63 116 19 124 0.67 2 4 0.14 1.3e+03 -1.6 3.3 22 89 173 237 169 261 0.60 3 4 3.6e-115 3.4e-111 371.4 28.4 1 299 300 596 300 597 0.93 4 4 0.14 1.3e+03 -1.6 3.8 220 245 625 650 601 671 0.47
Sequence Information
- Coding Sequence
- ATGGATACTGCCAGTGCCGTAGGTCGACGTCGCGTAAATTCGCGTGTCAATGCTGAAGATCAAGCTTTGGATCAAATAGCAAAAGAGGTTGTAAACGATGAAATCATCGAGGAGTTGTTTGATTTCAGCGATACCGATTTAAAAGAACTTGACGAATTAAAAATCGAAGAAGAATTTAAGAACAAtactaacaacaacaacaacaataacagcgATATCTCCACGTCTACTTTAGAGCTTTTAACAGAAGACAGCTATAAATTAAGGGaagataagaaaaatgttaaagatcTAGAAATGCAATcgcgaaaaataataaatgttagcAACAATAATCACGATAATGAAATAGCTCGAAAAGAAGAGCAACAAGGGGAGGAGCTAGTTTTGATATCGTTGCCAATTGATAACATTGATAAACAAACAGAAATCGTTCCAAAAGACAGGGAATTAGTCACAACAACAActgaaacaacaaataatataattagcTCTACAGAAAATGTAGTAAAATGCGAAATTAATAAACAGCAGAAACAAACAGAGCCAATTCAGTATGACTGCGGAGAAGAAAAGGATCTTAACAAAGACTATAGTAACAATGCCGTGCAAATCGCCAGTAGTTCTATTGTAAGCGATCATTCCACGAGCTCTTATAGTGACAATGGCGACAGCAAAGTATCAGCATCTTCAGACATAAAGTCTATGAAGATGAACGATTCATCAGAGTCATCTTCTTTCATTGAAATTGCCAAGGCAAATAGTAACAATGATACATGCAATGAGAATGGTGAGAATGAttgtgatgatgatgatgatgatgctgatgctgataATGAGCATGCTGAACCTTATGACGAAGTCTTAGTGCAATTCCTTGATGAAGCCAATCAGATTGCTGAAGCTAGGTTAGCTGCTAGAAGGCATGCCAGGGCGGAAGCTAGAGAAATACGTATGCGAGAGTTGGAACGCCAACAAAAGGAGCAAGAGTCCAATGCAGATCGAGTTTTCGATATGCATTCCACTGTATCTGGTATTACGCCATTGTCACACATGCGTCTGGCTTTGGGAAGTTCACCAGTTACAAGTTTGCTAAACTCAACCAGAGGTAACTCCATGTCCTCCAGACGCAGCAGTGAAGATTCCCTGGAAGAGGAAGGCCGAAGCTTAAGGGATATTCGTCATgaattaaaaGATGTTGAAGAACGGTTTCGGAAAGCTATGATAGCAAATGCTCAGCTAGATAATGATCGTGCCTCACAAACGTATCAAATACAGTTGTTGAAAGACAAACTGGAAGATATGGAAGAATCATATTCACAATTACAGCGGGAATGTAAGGAAAAGACACGCGATTGCAATGCATTGAAACGATCGTTGGATAAATTAAACGAAGAGCTTAAACTGGTGCAGGGTCAGCTGAGTGAGCGTGACACACTGATAGCGGAACAGGGTTTAATTATTGTGGCAGTTGAAAATGATGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAGTTATTGGGTTCGGTACAGGGATCATTAGATGTGCGACTTAAGAAATTCAGCGAAGAAAAACAACAGCTACAGACTGAAGTTCAACAGTTGCAGGAACAATTAGAATCGTATAAAAGTCAGGGCAAAGGTCGAGGCAAGGCCTCTTCTTCTAATGGTCCTTTAGGTTCAGATGATGATGATTATGAAGCTCAAagAGAAGCCAACAAAACCATAATggattataaatataagttaCAGAAAGCTGAACAAGAAATAGCTGGTCTTCAATCAAGTTTAGCGCGCTCCGAAACACAAGTTATACGTTATAAAAGTACAGCTGAGGCAGCCGAGAAAGCTGAAGCAGAACTTAAAATCGAGAGGAGGAAGCTGCAAAGAGagaATCGCGAGGCAATGGAAAAGCTTGAAGAGTTAGAAACATCAAATAATCATCTTCTTAAACGTTTGGACAAATTAAAGAATGCCAAAAGTGCTTTGCTAAAGGATCTCTGA
- Protein Sequence
- MDTASAVGRRRVNSRVNAEDQALDQIAKEVVNDEIIEELFDFSDTDLKELDELKIEEEFKNNTNNNNNNNSDISTSTLELLTEDSYKLREDKKNVKDLEMQSRKIINVSNNNHDNEIARKEEQQGEELVLISLPIDNIDKQTEIVPKDRELVTTTTETTNNIISSTENVVKCEINKQQKQTEPIQYDCGEEKDLNKDYSNNAVQIASSSIVSDHSTSSYSDNGDSKVSASSDIKSMKMNDSSESSSFIEIAKANSNNDTCNENGENDCDDDDDDADADNEHAEPYDEVLVQFLDEANQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSTVSGITPLSHMRLALGSSPVTSLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRDCNALKRSLDKLNEELKLVQGQLSERDTLIAEQGLIIVAVENDDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQTEVQQLQEQLESYKSQGKGRGKASSSNGPLGSDDDDYEAQREANKTIMDYKYKLQKAEQEIAGLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -