Basic Information

Insect: Orius laevigatus
Gene Symbol: ham
Assembly: GCA_018703685.1
Location: JAGWEN010000069.1:38482-47218[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 1.5 6e+02 0.7 0.0 21 36 25 40 17 53 0.72

2 6 0.8 3.1e+02 1.6 1.0 26 48 89 111 77 115 0.88

3 6 0.0047 1.9 8.7 0.3 21 44 141 164 131 170 0.89

4 6 0.068 27 5.0 0.1 26 45 481 500 472 503 0.89

5 6 0.026 10 6.4 0.5 21 45 504 528 500 532 0.89

6 6 0.0004 0.16 12.2 0.1 20 45 532 557 528 561 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	1.5	6e+02	0.7	0.0	21	36	25	40	17	53	0.72
2	6	0.8	3.1e+02	1.6	1.0	26	48	89	111	77	115	0.88
3	6	0.0047	1.9	8.7	0.3	21	44	141	164	131	170	0.89
4	6	0.068	27	5.0	0.1	26	45	481	500	472	503	0.89
5	6	0.026	10	6.4	0.5	21	45	504	528	500	532	0.89
6	6	0.0004	0.16	12.2	0.1	20	45	532	557	528	561	0.90

Sequence Information

Coding Sequence: ATGAGCATTTTAATTTTGAGCATCGGAGCAAAACTCCACGGTTCACATCAGTCAAGTAACGGAGAAGAAGACGACGAAGACATAGCGAGGTGTCCAGTTTGTGATACACCGTTTGCAGACGTCGACCAATTGGACGATCATCTAGTCTCAGGACATCGCTACGTGACCGGGCAATACCGGTGTGACAAGTGTACGAAGTCGTATTGCTGGAGGCCCTGCTTGGTCAAGCATCAGGCGACCCGTCACGGTGAAGTCCGTCGCTATTCTTGTGAAAACTGCACCAGAGTTTTCTCCGACCCGAGTAACCTTCAACGCCACATCAGGTCTCACCACGTTGGCGCCAGATCTCACGCTTGTCAAGAGTGCGGGAAAACGTTCGCTACGAGTTCAGGATTGAAGCAGCACACGCATATTCATTCGAGCGTGAAGCCCTTCCAGTGTGAAGTTTGCTATAAGGCGTATACGCAGTTCAGCAACCTTTGCCGCCATAAGCGCATGCACTCGGACTGCAGGTTGCAGATCAAGTGCGGAAAGTGCGGCCAGACGTTTAGTACTGGAACTTCTTTAGCGAAGCATAAACGATTTTGCGATTCGACATCTCCAGTTTCGACTCCACCAGCGATGAATCATATACCTCAGCCGGGTGCGAACCCATTTCTTCTTTATCCGAGAACGCATGGAGGGTTGCCGTTTTATCCTCCGACTCTTATTCCGCCGTATCCGTCGATCTTCCATCCTTCAGCGCCAGCTCCTGGACTGCTTTCGAACCCTTTGCTTTTTCCACCGAAACCGGAAGACGATCTGAGCAAGTTCAATAACTTCAGATTGACCACAGACGCGTACTATAATTTCCGACAGAGAGAATCTTCCCATTCGCCATCGCCGACGAGGACGGCGATTTCGCCTTCGGAACCCGTCACGCCGACGATGAACTCGATCCTCTCCTTGAGCAAGGTTTCCCCGCCTACGGCCGAGGAAGCCGTGACTAACGAGAGGCCGAGCCCTGCCAGACCTCCGACTTCGGCTTCATATCCGAAACAAGAGGAACTTCGAGAAATCTCTGTCGACGACAACGCATCCCCGGTGTCTTCAAAGGTCGAAAGCAATTCCGAGCAGCCTCTCGATTTAAGAGTCGGCGTCAAACGAGAACGTAGCGTTTCTCCTCCGCCACATTCACCGTCTCCCAAAATGAAAACTCCCATGGACTCTCCCGAAGAAGACAAACCACCTATGGCATACCCAAGGCCGATCCACCCTGTCTTCCTAGAAGCCCTTTATCGCCCTCAATTCGCCGACAGATTCCCCCCTCAGTTTCCCACAAGGCCGTTCCCTTTTATGGGATCTGTCAACCGCTATGACATAAGGGCGTTTGCTGGAAACAAACCTTATCAAGACGTCTTAGCCAGTACTCCACCAACAGGAAGAAACAAGGACCGCTATTCTTGTAAATTCTGCGGAAAAGTGTTCCCACGTTCGGCCAACTTGACGAGGCATCTCCGTACCCATACCGGCGAGCAACCCTACAAATGTAAATACTGCGAAAGATCCTTCAGCATCTCTTCCAACCTCCAACGCCACGTCAGAAACATCCACAACAAAGAGAAACCGTTCAAATGTCCTCTTTGCGACCGATGTTTCGGACAGCAGACTAATCTCGACCGCCATTTGAAGAAGCACGAAGGCGAAGATGGTTCCACCGTCACCGTCGCAGATTCCCCAAGCAGCGCCGAAAACGAAAGGGAAGAAACCTACTTCGACGAAATCCGCTCCTTCATGGGAAAAGTCACTTACGGCGGTCAATACGCGACGCCTCCTCCCGTCAAAGAAGAAACGGAAACGAGCTCAGAAGAGGGATCCCCGAGTCTTTCACCTTATCAAGAATCCCCGATCCCCCTCGTCATCTCGCCTTACGTCAAAGCCGAACCGCTCAACAACAACATAGAAACCGATCTTCAAGTCACATCTTAG
Protein Sequence: MSILILSIGAKLHGSHQSSNGEEDDEDIARCPVCDTPFADVDQLDDHLVSGHRYVTGQYRCDKCTKSYCWRPCLVKHQATRHGEVRRYSCENCTRVFSDPSNLQRHIRSHHVGARSHACQECGKTFATSSGLKQHTHIHSSVKPFQCEVCYKAYTQFSNLCRHKRMHSDCRLQIKCGKCGQTFSTGTSLAKHKRFCDSTSPVSTPPAMNHIPQPGANPFLLYPRTHGGLPFYPPTLIPPYPSIFHPSAPAPGLLSNPLLFPPKPEDDLSKFNNFRLTTDAYYNFRQRESSHSPSPTRTAISPSEPVTPTMNSILSLSKVSPPTAEEAVTNERPSPARPPTSASYPKQEELREISVDDNASPVSSKVESNSEQPLDLRVGVKRERSVSPPPHSPSPKMKTPMDSPEEDKPPMAYPRPIHPVFLEALYRPQFADRFPPQFPTRPFPFMGSVNRYDIRAFAGNKPYQDVLASTPPTGRNKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEGEDGSTVTVADSPSSAENEREETYFDEIRSFMGKVTYGGQYATPPPVKEETETSSEEGSPSLSPYQESPIPLVISPYVKAEPLNNNIETDLQVTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01108715; iTF_00340079;
90% Identity: iTF_01108715;
80% Identity: iTF_01108715;