Olae002717.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000275.1:20191-21291[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0033 1.3 9.2 0.0 12 45 57 90 51 96 0.88 2 9 3.6 1.4e+03 -0.5 0.1 21 32 124 135 96 147 0.76 3 9 0.0043 1.7 8.9 0.0 21 48 152 179 140 184 0.82 4 9 0.6 2.3e+02 2.0 0.0 21 43 180 202 176 207 0.86 5 9 0.024 9.3 6.5 0.0 21 51 208 238 200 241 0.85 6 9 2.1 8.4e+02 0.2 0.1 21 43 236 258 231 267 0.73 7 9 1.2 4.6e+02 1.1 0.2 21 32 264 275 253 287 0.80 8 9 0.16 62 3.8 0.0 20 46 291 317 281 323 0.81 9 9 0.9 3.5e+02 1.4 0.1 21 47 320 346 312 353 0.79
Sequence Information
- Coding Sequence
- ATGGACAACGAAGGCGTTAAACGAGAACATATCTTCATTAAAAAGGGGGATATCAAAGAAGAGAAAAATGATCCCGAAGAGTTCAAACAGGAAAGTACTATCGATCCTCTAGTCGTGCTTGAGGAGAACGACGATTGGGACTTCAATATTTATCAACATTTCTTCAACATGGAACAGGAAGGATCTCGGACTGGAAGCGATGGACTCTATCAGTGTGCCATCTGCTGGTCTGAGTTCTCACGTTCATCATATTTGAAGAGACATATAAAAAGCCATTCTGAAAAGAAGGAAAAACGTCACAAATGTGATCTTTGCGAGGCCAAATTCACAAGTTTAAGTAATAAGAAGATCCACATGAGATTTCACACTGGAGAGAAGCCTTACAAATGTGACCTTTGCGACGCTAAGTTTGTTCGCTTAGATCGAATGAAATCACACCAAAGAACTCACACTGGAGAAAAACCTTACAAATGTGATTTTTGTGAGGCCAAGTTCTTAAATTCAAAAAATTTAAAAATTCACGTTAGAGTTCACACAGGGGAAAAGCCTTACAAATGTGACCTTTGTGAGGCCAAATTCATTCGCTTGGAAAATCTGAAGACACACAAGACAAGCCACATTAAAGAAAAGCCTTTCAAATGTGATCTTTGTGAGGCTAAGTTTTCGAATTCAAAAAGTTTAAAAATTCATATTAGAGTCCACACTGGAGAAAAACCATACAACTGCGACCTTTGTGAGGCTAAGTTCATTCGCTTGGAACATCTGAAATCACACAATAGAGTTCACACTGAAGAAAAGCCGTATAAATGTGATATTTGTGAGGCCAGATTTTCATGTTTAAGCAGTAAGAAGAAACACAAAGTTGTTCATTCTGGAGAGAAGCCATACAAATGTGACCTTTGTAATGCAAGCTTCAATCGCTTGGATAATATGAAAACACACAAAAGAATTCACACTGGAGAAAAACCGTACAAATGTGATCTTTGTGAAGCCGAATTCAAAAGTTTAAGCAGTAAGAAGAAACATTTATTAGTTCATGCTGGAGAGAAGCCAAGCTCTTCCAATCAATCATTGTATTTACCATTTGACCAACTCTGCTGA
- Protein Sequence
- MDNEGVKREHIFIKKGDIKEEKNDPEEFKQESTIDPLVVLEENDDWDFNIYQHFFNMEQEGSRTGSDGLYQCAICWSEFSRSSYLKRHIKSHSEKKEKRHKCDLCEAKFTSLSNKKIHMRFHTGEKPYKCDLCDAKFVRLDRMKSHQRTHTGEKPYKCDFCEAKFLNSKNLKIHVRVHTGEKPYKCDLCEAKFIRLENLKTHKTSHIKEKPFKCDLCEAKFSNSKSLKIHIRVHTGEKPYNCDLCEAKFIRLEHLKSHNRVHTEEKPYKCDICEARFSCLSSKKKHKVVHSGEKPYKCDLCNASFNRLDNMKTHKRIHTGEKPYKCDLCEAEFKSLSSKKKHLLVHAGEKPSSSNQSLYLPFDQLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108742;
- 90% Identity
- iTF_01108742;
- 80% Identity
- iTF_01108742;