Olae007198.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000177.1:130424-131568[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.21 83 3.4 0.0 23 45 25 47 19 54 0.85 2 5 0.0011 0.42 10.8 0.0 21 44 51 74 46 80 0.87 3 5 0.21 84 3.4 0.2 18 42 76 100 71 106 0.69 4 5 0.0097 3.8 7.7 0.0 18 45 103 131 96 135 0.84 5 5 0.0045 1.8 8.8 0.0 21 45 135 159 133 165 0.88
Sequence Information
- Coding Sequence
- ATGAGCAAATGCGATGTCAGCATTGAAGAGGAAGAGAATGCGTGGGGTAGTTATGAGAGCGAAATTCATAGGAAGCCATACAAATGCGACGCTTGCGGTGCTAAATTTTCAAAGACGAGCAACCTGAAGGCTCATGTTCGAACCCACACCGGAGAGAAGCCGTTCAAATGCGAAATATGCGAAGCAACGTTTACCCAGTCTGGCCATTTGAAGACACATTCGAGAAGACACACTGGAGAAAAGCCGTACAAATGTGAAATATGCGAAAATAAGTTTTCGCATTTGAACCGTTTGAAGATGCACATGAGATCCCACACTGGAGAAAAGCCGTATGGTTGTCATCTTTGTGAAGCCAAGTTTTCCGAATCTGGGACACTCAAGAAACATTTTCGAATCCACACTGGAGAGAAGCCGTTTCCTTGTGATGTCTGCAACGCCAAATTCTCAGATGCGAGGACTTTAAAGAAACATTTTATGAGAGTCCATACTCAAGAAAGTGACACTGCAGTCAGCTAG
- Protein Sequence
- MSKCDVSIEEEENAWGSYESEIHRKPYKCDACGAKFSKTSNLKAHVRTHTGEKPFKCEICEATFTQSGHLKTHSRRHTGEKPYKCEICENKFSHLNRLKMHMRSHTGEKPYGCHLCEAKFSESGTLKKHFRIHTGEKPFPCDVCNAKFSDARTLKKHFMRVHTQESDTAVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108647; iTF_01108811;
- 90% Identity
- iTF_01108647; iTF_01108811;
- 80% Identity
- iTF_01108647; iTF_01108811;