Olae007372.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000260.1:92909-94183[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00061 0.24 11.6 0.0 24 47 13 36 4 42 0.81 2 15 1.3 5.2e+02 0.9 0.0 21 40 38 57 34 70 0.81 3 15 0.76 3e+02 1.7 0.1 22 44 67 89 59 92 0.82 4 15 0.085 33 4.7 0.1 21 43 94 116 87 125 0.80 5 15 2.6 1e+03 -0.1 0.1 21 33 122 134 116 149 0.75 6 15 2 7.7e+02 0.3 0.1 21 42 150 171 143 176 0.80 7 15 0.12 49 4.2 0.0 21 45 178 202 170 209 0.82 8 15 0.016 6.3 7.0 0.0 21 45 206 230 201 236 0.89 9 15 0.015 5.8 7.1 0.0 22 44 235 257 230 261 0.88 10 15 0.12 49 4.2 0.2 21 44 262 285 258 293 0.81 11 15 0.26 1e+02 3.2 0.0 21 43 290 312 286 317 0.83 12 15 0.28 1.1e+02 3.0 0.0 20 43 317 340 309 345 0.79 13 15 0.063 25 5.1 0.1 20 45 346 370 338 377 0.80 14 15 2.2 8.6e+02 0.2 0.1 21 44 374 397 369 406 0.80 15 15 0.85 3.4e+02 1.5 0.0 21 38 402 419 396 421 0.87
Sequence Information
- Coding Sequence
- ATGGATGTCCATAGTAAAGTCCTTACCAATCAGAAGTCGGTTAAATGCGTCGTATGCGACGCCGTGTTCGCCAATTCAAACAACATGAAAAGACACATGGCGACCCACACAAATGAAAAACCATTCAAATGCGACATGTGCGATGCCACCTTTTCTCGCTCAGATCATATGATTGCGCATAAGAGAACACACACAAAAGAGAGGCAGTACAAATGCGATTTATGCGATGCCACGTTTACACAGTCGCAGCATGTGAATATCCATATGAGGAGCCATACAGGAGAGAGGCCTTATAAATGCGAAATCTGCGATGCCGCTTTCTTCCGCTCAGACCATTTGAACGCCCATAAGAGGACACATACCAAAGAGAAGCCTTTCAAATGCGAAATATGCGATTCATCCTTCTCCCGGTTACATCATATGAACAGTCATATGAGAACGCATACAGGAGAGAGGCCATACAAATGCGACATGTGCGACGCCTCCTTCTCCCGTTCGGACTATATGAATGCCCATAAAAGAACACACACGAAAGAGAAGCCATATAAATGTTTTATCTGTGATGCCGCCTTTGCAAGGTCTGATCATATGAATGTTCATATGAGAACGCATACGGGAGAGAAGCCGTATAAATGTGTTGTATGCGATGCCACTTTTACCCAATCACATCATATGAATACTCATATGAAAACGCACACAAAAGAGAAGCAATATACATGTTTTGTCTGCAATGCCACCTTCACGCAGTCGGATCATTTGAAAGGTCATATAAGGACGCATACTGGAGAGAGGCCGTATAAATGTGAGGTATGCGAAGCCTCTTTTACACAGTCACATCACAAGAATATACATATGAGGACCCATACAGGGGAGAAGCCTTATAAGTGTGATTTCTGCGATGCCACTTTTACCCAGTCGCATCACAAAAATGTTCATATGAGAAGCCACACGGGAGAAAAGCCGTATAAATGCGACGTCTGCGATGCTGCCTTCTCCCGTTCAGACCATATGAATGCCCATAAAAGAAAACACACACAAGATACTCAATATACATGTGTTGTCTGCAATGCCACTTTCTCCCAGGCAGATCATTTGAAAGGCCATATAAGGACGCATACAGGAGAGAGGCCGTATAAATGTGATTACTGTGATTCTTCTTTTACCCAGTCACATCACAAGAATGTACATATGAGGACCCACACAGGAGAGAAGCCTTATAAGTGTGATTTCTGTGATGCCGCTTTTACCCAGTCGCATCACAGAATATCCATGTGA
- Protein Sequence
- MDVHSKVLTNQKSVKCVVCDAVFANSNNMKRHMATHTNEKPFKCDMCDATFSRSDHMIAHKRTHTKERQYKCDLCDATFTQSQHVNIHMRSHTGERPYKCEICDAAFFRSDHLNAHKRTHTKEKPFKCEICDSSFSRLHHMNSHMRTHTGERPYKCDMCDASFSRSDYMNAHKRTHTKEKPYKCFICDAAFARSDHMNVHMRTHTGEKPYKCVVCDATFTQSHHMNTHMKTHTKEKQYTCFVCNATFTQSDHLKGHIRTHTGERPYKCEVCEASFTQSHHKNIHMRTHTGEKPYKCDFCDATFTQSHHKNVHMRSHTGEKPYKCDVCDAAFSRSDHMNAHKRKHTQDTQYTCVVCNATFSQADHLKGHIRTHTGERPYKCDYCDSSFTQSHHKNVHMRTHTGEKPYKCDFCDAAFTQSHHRISM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108670;
- 90% Identity
- iTF_01108670;
- 80% Identity
- iTF_01108670;