Olae002131.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000304.1:105913-108236[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.002 0.8 9.9 0.0 18 52 92 126 83 128 0.83 2 10 0.64 2.5e+02 1.9 0.0 18 45 120 147 111 154 0.75 3 10 0.11 43 4.3 0.1 21 43 151 173 143 177 0.87 4 10 0.00022 0.085 13.0 0.0 10 44 167 202 165 210 0.84 5 10 1.4 5.4e+02 0.8 0.0 21 46 207 232 202 240 0.80 6 10 1.3 5.2e+02 0.9 0.0 21 46 235 260 225 267 0.80 7 10 1.1 4.3e+02 1.2 0.0 21 43 263 285 258 290 0.88 8 10 0.00018 0.073 13.2 0.1 10 44 279 314 274 323 0.84 9 10 0.56 2.2e+02 2.1 0.0 21 43 319 341 314 346 0.88 10 10 0.014 5.4 7.2 0.0 21 43 347 369 339 378 0.84
Sequence Information
- Coding Sequence
- ATGTCCAACAAAAAGTGCAATTACGCTCTATGTTCCAACAGTAGATCGAAGAATCCAGAGCTTCGTTTTTACCAGTTTCCTTCGGATCCCCAGTTAAAGAACAAATGGATTGAAAATTGCGGCAATGTCGATCTTCAAGATCTCAATTCGAAAGACATAAAGAATAGAGTCTTATGCTCCCATCATTTTGATCAGGGGCAGATAAATCCGGTATCTGGCAGATTATTTAGTCCCACTTTCACCGAGTCAAGCAGTTTGAAAAAGCATAAAAGGACCCACAGAGGAGAGAAGCCATATAACTGTGATATCTGCGATGCTACATTCACCACTCCAGGCAATTTGAAAAAGCATAAGAACATACACACAGGAGAGAAGCCACATAAATGTGAATTCTGCGAAGCTGCATTCACCGAGTTAACTAGTTTGAAAAATCATAAAAGGATCCACACAGGAGAGAAGCCATATAAATGTGACATCTGCGATGCCACATTCTCCTGGCCAGGCAGTTTGAAAAGGCATAATAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATCTGCGAAGCTTCATTCACCTCGTCACATGATTTGAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCGTATAAATGTGAATTCTGCGAAGCTGCATTCACCGAGTTAACTAGTTTGAAAAATCATAAAAGGATCCACACAGGAGAGAAGCCATATAAATGTGAATTCTGCGAAGCTGCATTCACCGAGTTAACTAGTTTGAAAAATCATAAAAGGATCCACACAGGAGAGAAGCCATATAAATGTGATTTCTGCGATGCCACATTCTCCTGGCCAGGCAGTTTGAAAAGGCATAATAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATCTGCGAAGCTTCATTCACCTCGTCACATGATTTGAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCGTATAAATGTGATACCTGCGATGCCACTTACGCCGATTCAAGCAGTTTGAAAACGCATAATAGGACCCACACTGGAGAGAAGCCATATAAATGTGATATCTGCAATGCTTCATTCGCCAGGTCGGGCTATTTGAAAAAGCATAATATGACCCACACAGGAGAAAAACCATAG
- Protein Sequence
- MSNKKCNYALCSNSRSKNPELRFYQFPSDPQLKNKWIENCGNVDLQDLNSKDIKNRVLCSHHFDQGQINPVSGRLFSPTFTESSSLKKHKRTHRGEKPYNCDICDATFTTPGNLKKHKNIHTGEKPHKCEFCEAAFTELTSLKNHKRIHTGEKPYKCDICDATFSWPGSLKRHNRTHTGEKPYKCDICEASFTSSHDLKRHNRTHTGEKPYKCEFCEAAFTELTSLKNHKRIHTGEKPYKCEFCEAAFTELTSLKNHKRIHTGEKPYKCDFCDATFSWPGSLKRHNRTHTGEKPYKCDICEASFTSSHDLKRHNRTHTGEKPYKCDTCDATYADSSSLKTHNRTHTGEKPYKCDICNASFARSGYLKKHNMTHTGEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108696;
- 90% Identity
- iTF_01108696;
- 80% Identity
- iTF_01108696;