Olae014037.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000099.1:216565-217665[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.005 2 8.6 0.1 21 44 17 40 9 44 0.86 2 11 0.0033 1.3 9.2 0.0 11 43 34 67 34 76 0.85 3 11 0.16 64 3.8 0.0 14 43 66 95 61 99 0.85 4 11 0.46 1.8e+02 2.4 0.1 20 34 100 114 93 128 0.75 5 11 0.012 4.6 7.5 0.0 20 43 128 151 112 156 0.82 6 11 0.29 1.1e+02 3.0 0.0 21 43 186 208 180 212 0.86 7 11 0.08 31 4.8 0.1 21 46 214 239 203 246 0.76 8 11 0.9 3.5e+02 1.4 0.1 21 43 242 264 231 269 0.81 9 11 0.0093 3.7 7.8 0.0 21 43 270 292 262 296 0.87 10 11 0.031 12 6.1 0.0 18 43 295 320 290 325 0.85 11 11 0.12 49 4.2 0.0 21 43 326 348 321 353 0.86
Sequence Information
- Coding Sequence
- ATGAGCAATTGTTCAGCCAATGTGACAAAACTTAAGAGGACCCAGATAGGAAACAAGCCATACAGATGTGATATCTGCTCTGCGACATTCACCCAGTCTGGCACTTTGAAAGCGCACATGAGGAGCCACTCAGGAGAGAAGCCCTACAAATGTGATATCTGCGATGCATCATTTGTTGTATCTGGAAGTTTGACCAAACATAGGAGAACTCATACAGGAGAGAAGCCCTACAAATGCGATTTCTGCGATGCTGCATTCGTCGAGTCTGGCAGTTTGACAAAACATAAGAGAACTCACACAGGAGAGAAGCCTTACGGATGTGACATTTGTATCGCCAAGTTTTCCAATCCAAGTGGTCTCGCATCACATAAAAGAATCCACACTGGAGAAAAGCCATACAAATGTGACATCTGTGATGCCTCATTTGCTCAATCGGGCAGTTTGTCAGCTCATAAGAGAACCCACACGGGAGAAAAGAGGTCTTACAAATGTGATATATGCGATGGGAGTTTTGCCCATTTGAGCAGTTTGAGTGTACACAAGAGGATCCATAGAGGAGAGAAGCCATACAGATGCGATGTCTGCGATGCTGCATTCACCCAGGGTGGCGCTTTGACATCGCACAAGAGAACCCACTCAGGAGAAAAGCCATACAAATGTGATATCTGCGATGCTGCGTTCATTACGTGTGCCAGTTTGACCAAACATAAGAGAATTCATACAGGAGAGAAGCCTTACGAATGTGAAATTTGTAATGATAAGTTTTCTCATTCGAATGCTCTAACATCACATAAAAGAACCCACACAGGAGAAAAGCCATTCAAATGCGAAATCTGCGATGCCTCATTTGCCCAAGTAAGTAATCTGACTTCTCATAAGAGAAAACATCAAGGAGAGAAGCCATTCAAATGCGATATCTGCGATGGCACATTTTCCCGATCAAATGTTTTGAAAGTACATAAGAGAATTCACACTGGAGAGAGACCATACCAGTGTGATGTCTGCGATGCCTCATTCACCCAGTCTGGCAGTTTGTTATTACATAAAAGAACCCATAAAGATATATCTGCGATGCCACCTTCATCCAGTCAAGCTTCATAA
- Protein Sequence
- MSNCSANVTKLKRTQIGNKPYRCDICSATFTQSGTLKAHMRSHSGEKPYKCDICDASFVVSGSLTKHRRTHTGEKPYKCDFCDAAFVESGSLTKHKRTHTGEKPYGCDICIAKFSNPSGLASHKRIHTGEKPYKCDICDASFAQSGSLSAHKRTHTGEKRSYKCDICDGSFAHLSSLSVHKRIHRGEKPYRCDVCDAAFTQGGALTSHKRTHSGEKPYKCDICDAAFITCASLTKHKRIHTGEKPYECEICNDKFSHSNALTSHKRTHTGEKPFKCEICDASFAQVSNLTSHKRKHQGEKPFKCDICDGTFSRSNVLKVHKRIHTGERPYQCDVCDASFTQSGSLLLHKRTHKDISAMPPSSSQAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108676;
- 90% Identity
- iTF_01108676;
- 80% Identity
- iTF_01108676;