Olae009329.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- a5
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000176.1:111117-114350[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.01 4.1 7.6 0.0 21 44 208 231 202 235 0.88 2 8 0.0019 0.76 10.0 0.0 21 45 236 260 233 267 0.87 3 8 0.2 78 3.5 0.0 21 45 264 288 260 291 0.86 4 8 0.016 6.2 7.1 0.1 21 45 292 316 288 319 0.91 5 8 0.02 7.7 6.7 0.2 21 43 320 342 316 347 0.91 6 8 0.004 1.6 8.9 0.1 21 48 348 375 343 379 0.85 7 8 0.13 53 4.1 0.0 21 45 376 400 371 407 0.90 8 8 0.075 29 4.9 0.0 21 44 432 455 420 460 0.85
Sequence Information
- Coding Sequence
- ATGCATATGCAGGTTTTGAGGGAAAACAATATTGTTCCGGATATCGTCAATAAGACCGTGAATGAAAAAACTGAGATAAATTATCGACAAGGAAGGAATATGGTCGAACTTGGGAATTTGATGAGTCCGACAGATACGAAAGATCCGCCGATTTTAAGATGGACGAGTGACCCCAATGTTTTGTATTTTGTATGCATGATTGATCCAGATATGCCGAATGCTCAGAAGCCTAGGTTGAAACAATTCCAACATTGGCTTGTTGGCAATATACCGGGTGATGACGTCGCCATGGGTGATGTTTTGACAGCATATGTTGGGCCGATTCCTTTCCAAGATTCTGGCATTCATCGTTACGTTTTTCTTGTCTTTAGGCAAAACAAAGAACTCGATTTTGATGATTTGATCATCATGAGAAACGAATTTATGCCGAGGGCTAAATTCAGTATAAAAGAGTTCGCTCGGAAGCATCAATTGGGGGATCCGATTGCGATCAATTTTTTCAGGTCGCAGCATGATAATCAGGTCGATGTTAATTTACTCGGTTTTAAAGATTCGATGGAAGAAAGGGCGACGGAAAGTACTCAAATGGAACCTTCTGTTCTTCAATACAGCATAAATGCAAGAGAAAAGCCTTATAAATGTGATATATGCGACGCCACATTCACCGAATCGAGCAGTTTGAAAAAACATACTTTGATCCACACAGGAGAGAAGCCATTTAAATGTCATATATGCGATGCCATGTTCACAGTTTCGGATAGATTGAAACGGCATATGGGGACGCACACAAAAGAAAAGCCGTTTAAATGTGATATTTGCGATGCCACATTTACCGCAGCGTGCAGTTTGAAATTGCATATTAGGATCCATACAGGAGAAAGGCCATATAAATGTGATATCTGCAATGCCACATTCGCTCTCACTGGTAGTTTGCAAAGACATTTAAGGAACCACACAGGAGAGCGACCATATCAATGTCAAATCTGCAGTGTCACATTCGCCCAGTCGGACCATTTGAAAAAACATGGCAGGACACATACAGGAGAGAGGCCTTATAAATGTGATATCTGCGATGCCAGATTCGCCCAGTCGAGCCAGGTGAAAAAACATGCCAAGATCCACATGAAAGAGAAGCCGTATAAATGTGATGTCTGCGATGCTTCATTCACTGCGACGAAAACGTTAAAAAAGCATGCCAGGATTCACACTGGAGAAAAGTTACATAAATGTGATTTCTGCGATGCTACTTTCGCTCTTTCTGGCTTTTTGAAAAATCATATGAGGAACCACACAGGAGAGAAGCCGTATAAATGTGATATCTGTCATGACACGTTCACCGAGTTACGCCATTTGAACAAACACGCTAAGACCCACACAAGTCACCAAGAAGCCATTTAA
- Protein Sequence
- MHMQVLRENNIVPDIVNKTVNEKTEINYRQGRNMVELGNLMSPTDTKDPPILRWTSDPNVLYFVCMIDPDMPNAQKPRLKQFQHWLVGNIPGDDVAMGDVLTAYVGPIPFQDSGIHRYVFLVFRQNKELDFDDLIIMRNEFMPRAKFSIKEFARKHQLGDPIAINFFRSQHDNQVDVNLLGFKDSMEERATESTQMEPSVLQYSINAREKPYKCDICDATFTESSSLKKHTLIHTGEKPFKCHICDAMFTVSDRLKRHMGTHTKEKPFKCDICDATFTAACSLKLHIRIHTGERPYKCDICNATFALTGSLQRHLRNHTGERPYQCQICSVTFAQSDHLKKHGRTHTGERPYKCDICDARFAQSSQVKKHAKIHMKEKPYKCDVCDASFTATKTLKKHARIHTGEKLHKCDFCDATFALSGFLKNHMRNHTGEKPYKCDICHDTFTELRHLNKHAKTHTSHQEAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108720;
- 90% Identity
- iTF_01108720;
- 80% Identity
- iTF_01108720;