Olae007928.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- Bcl11a
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010001092.1:1997-2902[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.89 3.5e+02 1.4 0.0 21 43 17 39 12 44 0.80 2 10 0.0074 2.9 8.1 0.0 20 44 44 68 29 76 0.74 3 10 0.19 73 3.6 0.0 22 44 74 96 68 100 0.87 4 10 0.0012 0.48 10.6 0.0 21 44 101 124 98 128 0.90 5 10 0.064 25 5.1 0.0 21 44 129 152 124 155 0.89 6 10 0.0042 1.7 8.9 0.0 21 44 157 180 154 185 0.88 7 10 0.017 6.9 6.9 0.0 18 44 182 208 180 217 0.85 8 10 0.69 2.7e+02 1.8 0.0 22 44 214 236 210 241 0.88 9 10 0.00036 0.14 12.3 0.0 13 43 233 263 226 268 0.87 10 10 0.0039 1.6 9.0 0.0 21 44 269 292 264 300 0.86
Sequence Information
- Coding Sequence
- ATGTTTAAGGATTCGAGCAGTTTGATCCATCATAAAAGGATCCACACAGGAGAAAAGCCATATAAATGTGATATCTGCGAAGGTGCATTCACCGCGCCAGGCGATTTAAAAAAGCATAAAAGGATCCACACAGGAGAGAAGCTATACAAATGTGACATCTGCGAAGCTGCATTCACCAAGTCAAGCAATTTGAAAACGCATAAAAGGACCCACACAGGAGATAAGCCATATAAATGTGACATCTGTGATGCCACGTTTATGTATTCAGGAGGTTTGAAAAGCCACATTTGGGCTCATACTGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCACCAAGTCAAGCAATTTGAAATCGCATAAAAGGATCCACACAGGAGAGAAGCCATACAAATGTGACATCTGCGATGCCACGTTTATGTATTCAGGAGGTTTAAAAACCCACATTTGGACTCATACTGGAGAGAAGCCATATAAATGTGATATCTGCGAAGCTGCATTCACCAAGTCATGCGATTTGAAAAAGCATAATAGGAGACACACGGGAGAGAAGCCATATAAATGTGACATCTGCGATGCCACTTTTATGTATTCAGGAGGTTTGAAAAGCCACATTTGGACTCATACTGGAAAGAAGCCATATAAATGTGATTTCTGCGAAGCTGCATTCACCGTGCCAAGCAATTTGAAAAAGCATAATAGTGTCCATACAGGAGAGAAGCCATATAAATGTGATATTTGCGATGCTACATTCACCAAGTCATGCAATTTGAAAACGCATAAAAGGACCCACACAGGAGAGAAGCCATTTAAATGTGATATCTGCCATGCCACTTTCACCGTGTCAAGCAGTTTGAAAAAGCATAATAGGACCCACACAGGAGAGAAGCCATATTAA
- Protein Sequence
- MFKDSSSLIHHKRIHTGEKPYKCDICEGAFTAPGDLKKHKRIHTGEKLYKCDICEAAFTKSSNLKTHKRTHTGDKPYKCDICDATFMYSGGLKSHIWAHTGEKPYKCDICDATFTKSSNLKSHKRIHTGEKPYKCDICDATFMYSGGLKTHIWTHTGEKPYKCDICEAAFTKSCDLKKHNRRHTGEKPYKCDICDATFMYSGGLKSHIWTHTGKKPYKCDFCEAAFTVPSNLKKHNSVHTGEKPYKCDICDATFTKSCNLKTHKRTHTGEKPFKCDICHATFTVSSSLKKHNRTHTGEKPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108689;
- 90% Identity
- iTF_01108689;
- 80% Identity
- iTF_01108689;