Olae004920.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000182.1:59892-61178[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.36 1.4e+02 2.7 0.0 25 43 13 31 5 37 0.87 2 14 0.022 8.5 6.6 0.0 21 47 37 63 33 68 0.86 3 14 0.035 14 5.9 0.1 21 43 65 87 61 92 0.89 4 14 0.0009 0.36 11.0 0.2 21 48 93 119 89 124 0.85 5 14 0.15 59 3.9 0.0 22 46 122 146 116 152 0.83 6 14 0.012 4.9 7.4 0.0 21 46 149 174 144 180 0.86 7 14 0.01 4 7.6 0.0 21 47 177 203 174 208 0.86 8 14 0.0053 2.1 8.6 0.0 21 43 205 227 201 232 0.92 9 14 0.011 4.1 7.6 0.0 21 43 233 255 228 259 0.89 10 14 0.003 1.2 9.4 0.0 17 49 257 289 255 292 0.88 11 14 0.033 13 6.0 0.0 21 43 289 311 285 317 0.89 12 14 0.072 28 4.9 0.0 21 48 317 344 312 349 0.85 13 14 0.16 64 3.8 0.0 21 43 345 367 341 372 0.89 14 14 0.73 2.9e+02 1.7 0.0 19 33 371 385 362 391 0.76
Sequence Information
- Coding Sequence
- ATGAAGCATAATAGGATCCACACAAGAGAGAAGCTTTATAAATGTGATATCTGCGAAGCTGAATTCACCGCGTCAGGCGCTTTGAAAAGGCATAATATGAACCACACAGGAGAGAAGCCTTATAAATGTGATATCTGCGATGCTGCATTCACCGCATCAGGCGCTTTGAAAAATCATTATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGTAATGCTACATTCTCCAGGTTAAGCAGTTTGAAAAGGCATAATATGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGTAATGCTGCATTCTCCAGGTCAAACCGTTTGAAAAGGCATAAAATGAAACACACTCGTAAGAAGCCTTATAAATGTGATATCTGCGATGGTATGTTTAAGAATTCAAGCAGTTTAATGAAGCATAATAGGATCCACACAGGAGAGAAGCCTTATAAATGTGATATCTGCAATGCTACATTCACCCTGTTAGGCAATTTGAATAGGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGAAGCTGCATTCAGCGAGTCAGGCTATTTGAAAAAGCATTATAGGATCCACACAGGAGAGAAGCCTTATAAATGTGATATCTGCGAAGCTGCATTCACCGAGTCAGGAGCTTTGAAAAGGCATAGTATTAACCACACAGGAGAGAAGCCATATAAATGTGATATCTGCAATACCGCATTCACCCAGTTAAGAGATTTGAAAACGCATAATAGTAGACACACAGGAGAGAAGCCATATAAATGTGACATCTGCGATGCCATGTTTACGTATTTAAGTAGTTTGAAAACACACCTTTCGATTCATACTGGAGAGAAGCCATATAAATGCGATATCTGCAATGCTACATTCACCACGTCAAGCAGTTTAAAAATGCATAATAAGACCCACACAGGAGAGAAACCTTATAAATGTGATATCTGCGAATTTGCATTCACCGCATCAGGCGATTTGAAAAAGCATTATAGGATCCACACTGGAGAGAAGCCTTATAAATGTGACATCTGTGATGCCAGGTTTGCGAGTTCAAGCGGTTTAAACAAGCATAATAGGACTCATACAGGAGAGAGGCCATATAAATGTGATATCTGCGATGCTACATTCACCTGGTCAAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTTTGA
- Protein Sequence
- MKHNRIHTREKLYKCDICEAEFTASGALKRHNMNHTGEKPYKCDICDAAFTASGALKNHYRIHTGEKPYKCDICNATFSRLSSLKRHNMTHTGEKPYKCDICNAAFSRSNRLKRHKMKHTRKKPYKCDICDGMFKNSSSLMKHNRIHTGEKPYKCDICNATFTLLGNLNRHNRIHTGEKPYKCDICEAAFSESGYLKKHYRIHTGEKPYKCDICEAAFTESGALKRHSINHTGEKPYKCDICNTAFTQLRDLKTHNSRHTGEKPYKCDICDAMFTYLSSLKTHLSIHTGEKPYKCDICNATFTTSSSLKMHNKTHTGEKPYKCDICEFAFTASGDLKKHYRIHTGEKPYKCDICDARFASSSGLNKHNRTHTGERPYKCDICDATFTWSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108673;
- 90% Identity
- iTF_01108673;
- 80% Identity
- iTF_01108673;