Olae002129.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000304.1:99651-103424[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0063 2.5 8.3 0.0 21 44 38 61 32 66 0.88 2 15 0.00077 0.3 11.2 0.0 18 43 63 88 61 93 0.90 3 15 0.024 9.4 6.5 0.0 21 43 94 116 89 121 0.89 4 15 0.003 1.2 9.4 0.0 11 44 111 145 109 153 0.83 5 15 0.19 75 3.6 0.0 11 35 139 164 138 174 0.73 6 15 0.0053 2.1 8.6 0.0 20 46 177 203 166 209 0.85 7 15 0.0029 1.1 9.4 0.0 21 43 206 228 201 233 0.91 8 15 0.0064 2.5 8.3 0.0 21 43 234 256 229 262 0.88 9 15 0.00017 0.067 13.3 0.0 21 44 262 285 257 289 0.89 10 15 0.0013 0.5 10.5 0.0 22 47 291 316 287 322 0.86 11 15 1.5 5.7e+02 0.7 0.1 21 36 318 333 313 336 0.82 12 15 0.2 79 3.5 0.0 26 43 351 368 348 373 0.91 13 15 0.018 7 6.9 0.0 21 45 374 398 369 401 0.87 14 15 0.0018 0.71 10.1 0.0 21 44 402 425 397 434 0.84 15 15 2 8e+02 0.3 0.1 21 32 430 441 425 445 0.84
Sequence Information
- Coding Sequence
- ATGGTCGTCAGAGAGAAGCCATATAAATGTGAAATCTGCAATGATAGTGATACATGCGATGCTACATACAGCACATCTGGTGATTTGACAAGGCTTAATAGAATCAACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCAACGTTCACCTTGTCAGACAGTTTGAAAAGGCATAACAGGAGACACACAGGAGAGAAGCCATATAAATGTGATATCTGCGAAGCTGCATTCACCGAGTCAGGCAATTTAAAAAAGCATAAAAGGACCCACACAGGAGAGAAGCCATTTAAATGTGATATCTGCGATGCTACATTCACTGAGTCAGGCACTTTGAAAAAGCATAATAGGACCCACACAGGAGAGAAGCCATTTAAATGTGATATCTGCGATGCTACATTCACTGAGTCAGGCACTTTGAAAAAGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTTCATTCACCGTGCCAAGCAGTTTGAAATCTCATAATTGGACCCACAAAGAGGAGAAGCCACATAAATGTGATATCTGCGATGCAATGTTCACGCAGGCAGGCCATTTGAAAACGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCACCGACTCAAGCCAATTAAAAAGGCATAGTAGGACCCACACAGGAGAGAAGCCATATAAATGTAATGTCTGCGATGCTACATTCACCGACTCAAGCCATTTAAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCAACCAGTCAAGCAATTTGAAAAACCATAATAGGATCCACTTAGGAGAGAAGCCATTTAAATGTGGTATCTGCCAAGCTGCGTTCACCGACTCAAGCAATTTGAAAAACCATAATAGGATTCACACAGGAGAGAAGCCGTATAAATGTGATATCTGTGATGCAAGGTTTATGCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATACAAATGTGATATCTGCCAAGCTACATTCACCCTGAGTAGCAGTTTAAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCCAAGCTGCATTCACCGATTCAAGCAGTTTGAAATCGCATAATAGGACCCGCACAGGTGAGAAGCCATTTAAATGTGATATCTGCGATGCCACTTTCACCCACTCAAGCAGTTTGAAAAGGCATGAAAGGACCCACACAGGAGAGAAGCCATATAAATGTGGCATCTGCGATGCAACATTCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTTTGA
- Protein Sequence
- MVVREKPYKCEICNDSDTCDATYSTSGDLTRLNRINTGEKPYKCDICDATFTLSDSLKRHNRRHTGEKPYKCDICEAAFTESGNLKKHKRTHTGEKPFKCDICDATFTESGTLKKHNRTHTGEKPFKCDICDATFTESGTLKKHNRTHTGEKPYKCDICDASFTVPSSLKSHNWTHKEEKPHKCDICDAMFTQAGHLKTHNRIHTGEKPYKCDICDATFTDSSQLKRHSRTHTGEKPYKCNVCDATFTDSSHLKRHNRTHTGEKPYKCDICDATFNQSSNLKNHNRIHLGEKPFKCGICQAAFTDSSNLKNHNRIHTGEKPYKCDICDARFMQXXXXXXXXXXXXXXXXYKCDICQATFTLSSSLKRHNRTHTGEKPYKCDICQAAFTDSSSLKSHNRTRTGEKPFKCDICDATFTHSSSLKRHERTHTGEKPYKCGICDATFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108669;
- 90% Identity
- iTF_01108669;
- 80% Identity
- iTF_01108669;