Olae002124.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Orius laevigatus
Gene Symbol
-
Assembly
GCA_018703685.1
Location
JAGWEN010000304.1:74734-78139[-]

Transcription Factor Domain

TF Family
zf-GAGA
Domain
zf-GAGA domain
PFAM
PF09237
TF Group
Zinc-Coordinating Group
Description
Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.12 46 4.3 0.0 21 43 17 39 10 45 0.88
2 16 0.0061 2.4 8.4 0.0 21 43 45 67 40 71 0.90
3 16 0.028 11 6.3 0.0 21 44 73 96 68 104 0.86
4 16 2.1 8.2e+02 0.3 0.1 21 33 101 113 97 118 0.86
5 16 0.037 15 5.9 0.0 21 44 120 143 115 150 0.90
6 16 0.038 15 5.8 0.0 22 43 149 170 144 175 0.88
7 16 0.0057 2.3 8.4 0.0 21 43 176 198 171 203 0.90
8 16 0.0032 1.3 9.2 0.0 21 43 204 226 199 230 0.90
9 16 0.0033 1.3 9.2 0.0 21 43 232 254 227 258 0.91
10 16 0.003 1.2 9.4 0.0 21 43 260 282 255 287 0.90
11 16 0.0031 1.2 9.3 0.0 21 43 288 310 283 315 0.90
12 16 0.0056 2.2 8.5 0.0 21 43 316 338 311 343 0.90
13 16 0.0035 1.4 9.1 0.0 21 43 344 366 339 370 0.91
14 16 0.054 21 5.3 0.0 21 44 372 395 368 399 0.88
15 16 0.036 14 5.9 0.0 21 44 400 423 395 432 0.86
16 16 6.4 2.5e+03 -1.3 0.1 21 30 428 437 423 440 0.84

Sequence Information

Coding Sequence
ATGTTTAAGGATTCGAGCAGTTTAATAAAGCATAATAGGATTCACACAGGAGAGAAGCCATATAAATGTGATATCTGTGACGCTACATTTACCATGTTATACAGTTTGAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCGTATAAATGTGATATCTGCGATGCCACTTTCACCTTGTCAAACAGTTTGAAAAGGCATAACAGGACCCACACAGGAGAGAAACCATATAAATGTGATATCTGCCATGCCTTGTTTGCGTATTCAAGTGGTTTGAGTAGCCACATTTGGACTCACACTGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACATTCACCCTGACCCACACAGGAGAGAAGCCATTTAAATGTGATATCTGCCAAAATGCATTCACAGAGTCAGGCCCTTTGAAAAGGCATAAAAGGATCCACACAGGAGAGAAGACATATAAATGTTCTATCTGCGATGCTACATTCACCGACTCAAGCCATTTAAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCATTGAGTCAAGCACTTTGAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCACTGAGTCAAGCAATTTGAAAACGCATAATAGGACCCACACTGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACCGAGTCAAGCACTTTGAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCACCAACTCAAGCCATTTAAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACCGAGTCAAGCACTTTGAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCATCGACTCAAGCCATTTAAAAAGGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCACCGACTCAAGCCATTTAAAAAGGCATAATGGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCTACATTCACTGAGTCAGGCCATTTGAAAAGCCATAGAAGGATTCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTGCATTCACCACGTCAAGCACTTTGAAAAATCATAATAGGACCCACACGGGAGAGAAGCCATATAAATGTGACATCTGTGATTCAAAGTTCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCGACATTTCTGA
Protein Sequence
MFKDSSSLIKHNRIHTGEKPYKCDICDATFTMLYSLKRHNRTHTGEKPYKCDICDATFTLSNSLKRHNRTHTGEKPYKCDICHALFAYSSGLSSHIWTHTGEKPYKCDICDATFTLTHTGEKPFKCDICQNAFTESGPLKRHKRIHTGEKTYKCSICDATFTDSSHLKRHNRTHTGEKPYKCDICDATFIESSTLKRHNRTHTGEKPYKCDICDATFTESSNLKTHNRTHTGEKPYKCDICDATFTESSTLKRHNRTHTGEKPYKCDICDATFTNSSHLKRHNRTHTGEKPYKCDICDATFTESSTLKRHNRTHTGEKPYKCDICDATFIDSSHLKRHNRTHTGEKPYKCDICDATFTDSSHLKRHNGTHTGEKPYKCDICDATFTESGHLKSHRRIHTGEKPYKCDICDAAFTTSSTLKNHNRTHTGEKPYKCDICDSKFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01108667;
90% Identity
iTF_01108667;
80% Identity
iTF_01108667;