Olae008264.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000562.1:58802-61491[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.017 6.5 7.0 0.0 20 47 17 44 7 49 0.83 2 15 0.0018 0.69 10.1 0.0 21 43 46 68 41 73 0.91 3 15 0.0012 0.46 10.7 0.0 21 51 74 104 69 106 0.86 4 15 0.034 13 6.0 0.0 21 47 102 128 100 133 0.86 5 15 0.026 10 6.4 0.0 21 44 130 153 125 161 0.87 6 15 0.24 95 3.2 0.0 21 44 158 181 153 185 0.86 7 15 0.0022 0.85 9.8 0.0 21 47 186 212 182 217 0.86 8 15 0.019 7.7 6.8 0.0 21 44 214 237 209 242 0.91 9 15 1.7 6.8e+02 0.5 0.0 20 34 269 283 257 296 0.75 10 15 0.0087 3.4 7.9 0.0 21 47 298 324 287 329 0.88 11 15 0.0019 0.76 10.0 0.0 21 48 326 353 324 357 0.86 12 15 0.0026 1 9.5 0.0 21 47 354 380 350 385 0.86 13 15 0.0014 0.54 10.4 0.0 21 47 382 408 377 413 0.86 14 15 0.038 15 5.8 0.0 21 43 410 432 407 437 0.91 15 15 0.01 3.9 7.7 0.0 21 43 438 460 433 463 0.91
Sequence Information
- Coding Sequence
- ATGACATACGACCTCCTTGGAAATTTAAAAAAGCATACTAGGATCCACAGAGGAGAGAAGCCGTATAAATGTGATATCTGTGATTCTACATTCACGGAGTCAGGCGATTTGAAAAAGCATACTAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCTACATTCACTACGTCAAGCAATCTGAAAAAGCATAATAGGACCCACACTGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCACCTGGCGAGGCAATTTGAGAAAGCATATTAGGGTCCACACAGGAGAGAAGCCGTATAAATGTGATATCTGTGATTCTACATTCACCGAGTCAGGCGATTTGAAAAAGCATACTAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCTACATTCACTACGTCAAGCTGTCTGAAAAAGCATAATAGGACCCATACTGGAGAGAAGCCATATAAATGTGATGTCTGCGAAGCTGCATTCATCTTGAAAGGTAATTTGAAACAGCATAATAGGATCCATACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCACTACGTCAGGCAATTTGAAAAATCATACTAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCCACATTCACCGAGTCAGGCCATTTGAAAAAGCATACTAGGGCCCACACAGGAGAGAAGCTATATAAATGTGACATCTGCGATTCTACATTCACCAGGTGGGGCGGTTTGAAAAAGCATAATATTACCCACACAGGAGAGAAGCCATATAAATGTGACATCTGCGATTCTACATTCACCAGGTGGGGCAGTTTGAAAACGCATAATATTACCCACATAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCACCGAGTCAGGCAGTTTGAAAAAGCATAATAATATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTGCATTCACCGAGCCAGGCAATTTGAAAAGGCATAATAATATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTGCATTCACCGAGCCAGGCAATTTGAAAAGGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCACTACGTCAAGCAATTTGAAAAATCATACTAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCTACATTCACTACGTCAAGCTGTCTGAAAAAGCATAATAGGACCCATACTGGAGAGAAGCCATATAAATGTGATGTCTGCGATGCTAAATTCACCAGGTCGGGCAATTTGAAAAAGCATAATAGGACCCACTGA
- Protein Sequence
- MTYDLLGNLKKHTRIHRGEKPYKCDICDSTFTESGDLKKHTRIHTGEKPYKCDICDATFTTSSNLKKHNRTHTGEKPYKCDICDATFTWRGNLRKHIRVHTGEKPYKCDICDSTFTESGDLKKHTRIHTGEKPYKCDICDATFTTSSCLKKHNRTHTGEKPYKCDVCEAAFILKGNLKQHNRIHTGEKPYKCDICDATFTTSGNLKNHTRIHTGEKPYKCDICDATFTESGHLKKHTRAHTGEKLYKCDICDSTFTRWGGLKKHNITHTGEKPYKCDICDSTFTRWGSLKTHNITHIGEKPYKCDICDATFTESGSLKKHNNIHTGEKPYKCDICDAAFTEPGNLKRHNNIHTGEKPYKCDICDAAFTEPGNLKRHNRIHTGEKPYKCDICDATFTTSSNLKNHTRIHTGEKPYKCDICDATFTTSSCLKKHNRTHTGEKPYKCDVCDAKFTRSGNLKKHNRTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108664;
- 90% Identity
- iTF_01108664;
- 80% Identity
- iTF_01108664;