Olae012066.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010001385.1:17393-25003[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0061 2.4 8.4 0.0 21 45 26 50 22 57 0.86 2 26 0.22 88 3.4 0.0 18 43 51 76 50 81 0.87 3 26 0.032 13 6.0 0.0 21 44 82 105 74 109 0.88 4 26 0.089 35 4.6 0.0 18 43 107 132 105 136 0.88 5 26 0.094 37 4.6 0.0 21 44 138 161 130 166 0.84 6 26 0.076 30 4.9 0.0 17 43 162 188 158 192 0.85 7 26 0.16 61 3.9 0.0 21 44 194 217 189 221 0.88 8 26 0.24 94 3.3 0.0 21 43 222 244 214 248 0.86 9 26 0.039 15 5.8 0.0 21 43 250 272 238 281 0.87 10 26 0.64 2.5e+02 1.9 0.1 21 43 278 300 275 305 0.85 11 26 0.0011 0.44 10.7 0.0 18 43 302 328 297 332 0.83 12 26 0.073 29 4.9 0.0 17 43 329 356 326 365 0.79 13 26 0.28 1.1e+02 3.0 0.0 21 43 362 384 354 389 0.88 14 26 0.038 15 5.8 0.0 20 43 389 412 378 418 0.84 15 26 0.055 22 5.3 0.0 21 43 418 440 413 445 0.90 16 26 0.0063 2.5 8.3 0.0 21 44 446 469 441 473 0.89 17 26 0.11 42 4.4 0.0 21 43 474 496 469 501 0.90 18 26 0.22 86 3.4 0.1 20 33 501 514 494 518 0.84 19 26 0.00059 0.23 11.6 0.0 21 44 520 543 516 547 0.90 20 26 0.018 6.9 6.9 0.0 21 46 548 573 544 579 0.85 21 26 0.0048 1.9 8.7 0.0 21 45 576 600 572 607 0.87 22 26 0.089 35 4.6 0.0 21 44 604 627 599 635 0.84 23 26 1.1 4.2e+02 1.2 0.0 22 44 633 655 628 659 0.86 24 26 0.0043 1.7 8.8 0.1 18 47 657 686 652 692 0.86 25 26 2.4 9.4e+02 0.1 0.0 21 45 688 712 683 719 0.84 26 26 0.0062 2.4 8.3 0.0 21 48 716 743 699 749 0.82
Sequence Information
- Coding Sequence
- ATGGCCCGAAAGTCCCTACTCCCTTCATCATTCCGAAATCTGCCGATTTTACCGCCGCTTTTTAGGATCCACACAGGAGAGAAGCCATATAAATGTGGTATCTGTGATGTTGCATTCACCCAGTCAAGCGATTTGAAAAAGCATTATAGGCGCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACCGAGAAAGCCTATTTGAAAAAGCATAATTGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACCGCGTCAGGCAGTTTGAAAAAGCATTATAGGCGCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACCGTGTCAAGCAGTTTGAAAATGCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCACCGAGAAAAGCCATTTGAAAAAGCATTATAGGCGCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACCGTGTCAAGCAGTTTGAAAATTCATAATAGGACCCACACAGGAGAGAAGCCATATAAATGTGGTATCTGTGATGTTGCATTCACCACGTCAAGCGATTTGAAAAAGCATAATAGGATCCACACTGGAGAGAAGCCATTTAAATGTGATATCTGTGATGCTACATTCACCCTGTCAGGCCATTTGAAAACGCATAATAAGACACACACAGGAGAGAAGCCATATAAATGTGATATCTGCAATGCTACATTCACCCAGAAAGCCCATTTGAAAACGCATAATTGGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCACCGAGAAAAGCCATTTGAAAACGCATAAAAGGTCCCATGCAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCTACATTCACCCAGTCAGGCAGTTTAAAAAAGCATACTAGGAGCCACACTGGAGAGAAGCCTTATAAATGTGACATCTGTGAAGCCATGTTTGTGTGTTCAAGCGGTTTAAAAATACATAATAGGACCCATACAGGAGAGAAGCCATATAAATGTGATTTTTGCGAAGCTACATTCATCCTGTCAGGCCATTTGAAAAGGCATAATAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACCCTGTCAAGCAGTTTGAAAAAGCATAATATGACCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACCGAGAAAAGCAATTTGAAAACGCATAAAAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATCTGTGATGCTACATTCATCCAGTCAGGCGGTTTAAAAAAGCATACTAGGATCCACACTGGAGAGAAGCCTTATAAATGTGACATCTGTGATGCCATGTTTGCGTGTTCAAGCGGTTTAAAACAGCATGATAGGACCCATAAAGGAGAGAAACCGTATAAATGTGATATCTGCTTTGCCATGTTTTCGATCCACACAGGTGAGAAGCCATATAAATGTGATATCTGCGATGCCACTTTCACCCAGTCAGGCAGTTTAAAAAGGCATAAAAGGATCCACACAGGTGAGAAGCCATATAAATGTGATATATGCTTTGCTACATTCGCCTCAAAAGACCATTTGACAAGGCATAATAGGATCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGATGCCATGTTTGCGTCTTCAAGCACTTTGAGAAGCCACATTTCTGCTCATACTGGAGAGAAGCCATATAAATGTGATATATGCGATGCCACTTTCACTGCGTCTGGCAGTTTGAAAATTCATTATAGGCACCACATAGGAGAGAAGCCATATAAATGTGATATCTGCGATGAAATGTTTGCGTATTCAAGCACTTTGAAAATGCATTATTGGCGCCACACAGGAGAGAAGCCATATAAATGTGATATCTGCGAAGCTGCATTCACTGCTTCATGCGTTTTAAAAAGGCATAAAAGGATCCACACAGGTGAGAAGCCATATAAATGTGATTTCTGTGAAGCTGCTTTCACCGAGAAAGGCCATTTGAAAACGCATATAAGGACCCATACAGGAGAGAAGCCATATAAATGTGATATCTGCGAAGCTGCATTCACCGCGTCAAGCGATTTGAAAAAGCATAAAAGGATCCACACAGGTAAGAAGCCATATAAATGTGATTTATGTGAAGCTGCTTTCACCGAGAAAGGCTATTTGAAAACGCATAAAAGGAGCCATACAGGAGAGAAGAGAAGCCATATAAATGTGACATCTGCGATGCCATGTTTGCGTATTCAAGCACTTTGA
- Protein Sequence
- MARKSLLPSSFRNLPILPPLFRIHTGEKPYKCGICDVAFTQSSDLKKHYRRHTGEKPYKCDICDATFTEKAYLKKHNWTHTGEKPYKCDICDATFTASGSLKKHYRRHTGEKPYKCDICDATFTVSSSLKMHNRTHTGEKPYKCDICDATFTEKSHLKKHYRRHTGEKPYKCDICDATFTVSSSLKIHNRTHTGEKPYKCGICDVAFTTSSDLKKHNRIHTGEKPFKCDICDATFTLSGHLKTHNKTHTGEKPYKCDICNATFTQKAHLKTHNWTHTGEKPYKCDICDATFTEKSHLKTHKRSHAGEKPYKCDICDATFTQSGSLKKHTRSHTGEKPYKCDICEAMFVCSSGLKIHNRTHTGEKPYKCDFCEATFILSGHLKRHNRTHTGEKPYKCDICDATFTLSSSLKKHNMTHTGEKPYKCDICDATFTEKSNLKTHKRTHTGEKPYKCDICDATFIQSGGLKKHTRIHTGEKPYKCDICDAMFACSSGLKQHDRTHKGEKPYKCDICFAMFSIHTGEKPYKCDICDATFTQSGSLKRHKRIHTGEKPYKCDICFATFASKDHLTRHNRIHTGEKPYKCDICDAMFASSSTLRSHISAHTGEKPYKCDICDATFTASGSLKIHYRHHIGEKPYKCDICDEMFAYSSTLKMHYWRHTGEKPYKCDICEAAFTASCVLKRHKRIHTGEKPYKCDFCEAAFTEKGHLKTHIRTHTGEKPYKCDICEAAFTASSDLKKHKRIHTGKKPYKCDLCEAAFTEKGYLKTHKRSHTGEKRSHINVTSAMPCLRIQAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108660;
- 90% Identity
- iTF_01108660;
- 80% Identity
- iTF_01108660;