Olae012392.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- -
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000095.1:41619-45844[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00031 0.019 15.4 5.8 1 23 98 120 98 121 0.96 2 18 0.00076 0.046 14.2 0.9 2 23 138 159 137 159 0.97 3 18 4e-06 0.00024 21.4 0.7 1 23 165 187 165 187 0.97 4 18 2e-05 0.0012 19.2 0.8 1 23 193 215 193 215 0.98 5 18 0.00016 0.0097 16.3 0.9 1 23 222 244 222 244 0.98 6 18 0.029 1.8 9.2 3.1 1 23 250 272 250 272 0.98 7 18 3.1e-06 0.00019 21.7 0.3 1 23 278 300 278 300 0.96 8 18 4.4e-07 2.7e-05 24.4 0.2 1 23 306 328 306 328 0.98 9 18 0.0052 0.31 11.6 0.5 2 23 336 357 336 357 0.95 10 18 0.00013 0.008 16.6 1.6 1 23 420 442 420 442 0.97 11 18 0.0028 0.17 12.4 0.2 2 21 445 464 444 465 0.92 12 18 7.4e-06 0.00045 20.5 1.6 1 23 504 526 504 526 0.98 13 18 0.0078 0.47 11.0 1.0 1 23 532 554 532 554 0.98 14 18 6.7e-06 0.00041 20.7 0.2 1 23 560 582 560 582 0.98 15 18 0.005 0.3 11.6 5.0 1 23 588 611 588 611 0.94 16 18 6.5 3.9e+02 1.8 0.0 2 23 615 637 614 637 0.90 17 18 0.98 59 4.4 0.4 2 23 644 666 643 666 0.92 18 18 0.026 1.6 9.4 0.1 1 20 760 779 760 782 0.94
Sequence Information
- Coding Sequence
- ATGGCGGAGATGGAGTCAATAGAAGACTGCGGGGGTTTCCGCGAAGAATTCGTTTTCGTCGAAGAATACTTCCCTTTGGACCTTCACGAAGAAGAAGTCGTCGCCGAATCCGTCGAAGAAACGGTCGAACAAGACGAAAACGAAGAAGTAATCCAAGCTACCAACAGCATTTTGCCTGAGGGCTATGACCCGATGGACCCGACCCAATGGGCTCATGAAGAAGTCGTCGTTGAATCCACTGATGAGCCCATAATCCGAGAAGACAATGATGAAACAGAGCAAACTCATGTCTACGAATGCTACAAGTGCGCCAAAAGATTCAACTACAAAGACAAATTATTCAAGCATATGAAGTTGCATCATGCCAGAGGCGATGATTTGATGATTGAGAGAGATGGAAAAAGAATTTGGACTTGTACGCAATGTGATAAGACGTTTATATCAAGGAAAGGGTCGATAATTCACCAAAGGACGCATACAGGAGAGCGACCTTATTCGTGCAGTGTTTGTCAGAAACGTTTCATCGATAGTAGCACGTTGATGAAGCATCAAGTGATCCATCAAGCAGTCAGACCGTTTAGCTGCTTGATTTGTCGCAGAGGGTTTAACCAAAAAGTCGCACTGCAGCGTCATGAGAGGACACATGGGCAGCTTCAGCCGACGTATAAGTGTAAATTTTGTCCTAAGACGTTTTTGGTGTCGAGCAGCCTCCAAGCTCATGAGAAAATCCACTCTGGGATTAAGCCGTACACATGTCAATATTGCCCGAGCAGATTTCATACGTCGACCGCTCAAAGGCAGCATGAAAGAGTCCATACAAACGAAAGACCTTATGCGTGCAGCTATTGCCCTAAAGCGTTCAAAGACAGCGGGACGTTGTTCAAACATCAAGTTATTCATTCAGGCATCCGTCCTTTTGTCTGCCCTATCTGCTCTCAAGGTTTCACACAAAAAGTCGCATTACGTAAGCACATCCGATCGCACGTTTCGCGCAACCAAGACAACGTCTGCGACATCTGCGCCACTCAGTTTTTCAACAAAGATGATCTTTGTTCGCACATTGAAGCTCACATTGAGACCCACCCGTCTCTTTCTCATGTACGGAATGTTGCCACTTCATCTCTCCGGAAGCAAGAAACCGTACAAACCATCAAGATTCCCTCTCCGGAGCCAGAAAGGACGGAAGAAAGCGACATGAGCGATTTGGCCACTTTGTGCGATGTTGCCATCTCAACCGCCGGCGATCTGGCCCAAAGTTACCCTTGCTTGCACTGTGGGATGAATTTCAGAAGGAAAAAGTCTTTAGATTTGCATCTCTCTATACATAGAATGACATGCAAATATTGCGAAAGGCCTTTCCCTGATAAAGCATCTTTGGATACACACGAAAAGAAGTTGTGTACGCTTGCGACCACACAGCAGCCTCAGTCTCCAAGATCTTCTGCTCTCGAATCGCCTCCTCAGGCGCAAAATAAACAAAACCAAGGGTCCAAACAACCTAAAAGGTTCTTCTACTGCGACACATGCGATAAAACGTTTAGCTCCAGAAATGGGTATATTATCCACCAAAGAAGCCACACAGGTGAAAGACCGTATCCTTGCCGCTGGTGTACCAAAGCTTTTGGAGATTCTGCCACAAGGCATAAACATGAGCGCATTCATACTGGTGAAAGGCCATTCAAATGCGGAAGATGCCCAAAAGCTTTTAACCAAAGAGCAGCACTTCGTGCTCATCAAGTCACCCATACTGTTGACCGTGCTTTCTTGTGCAAACATTGCCCATCGTCGTTCCCGTACTATGCGACACTGAAACGTCATCAGCAGTCGTGCCATAGTCAGACGCCATGTCCGATTTGCCTCCAGATGGTCGCCGATGGAAAAGTCCTCCACGACCACATCAAAGAGGCCCATGTGGTCGACTCGAACCTCACGTGCACAATCTGCGACTCTTCTATCTTCACCGACGTCGACGAATTCTGCTCGCACATCATTTGGCATTACAAGCAAGTTCCGAATGAGTCTGAGATTGACACGCAAGAAGAGGTCATCGCCAATGAAGAAGAAGTCGGCCTCGAAAACGACCCTTTGATTGAAGACGTCGTCGAATTCGAAACCGTCGAAACATCCATCAAACAAGAAGTGATTGAAGAAGAAGAAGTCAACTTGGACGATGAAGACTTTCAGGAAGAATACATTGAAGATCAGGACATCATCGGCAGAGAAGAGGTCGTCGAACAAACCGTCGTCACCGACGACTTCCCTATCACCGAAGAAGCTTTCGCCTGTGACATGTGTGGAGCTCTTTTCCAGGACAAAGAGCTCCTCAAAGAACATATCCCTCTTCACTTTTAA
- Protein Sequence
- MAEMESIEDCGGFREEFVFVEEYFPLDLHEEEVVAESVEETVEQDENEEVIQATNSILPEGYDPMDPTQWAHEEVVVESTDEPIIREDNDETEQTHVYECYKCAKRFNYKDKLFKHMKLHHARGDDLMIERDGKRIWTCTQCDKTFISRKGSIIHQRTHTGERPYSCSVCQKRFIDSSTLMKHQVIHQAVRPFSCLICRRGFNQKVALQRHERTHGQLQPTYKCKFCPKTFLVSSSLQAHEKIHSGIKPYTCQYCPSRFHTSTAQRQHERVHTNERPYACSYCPKAFKDSGTLFKHQVIHSGIRPFVCPICSQGFTQKVALRKHIRSHVSRNQDNVCDICATQFFNKDDLCSHIEAHIETHPSLSHVRNVATSSLRKQETVQTIKIPSPEPERTEESDMSDLATLCDVAISTAGDLAQSYPCLHCGMNFRRKKSLDLHLSIHRMTCKYCERPFPDKASLDTHEKKLCTLATTQQPQSPRSSALESPPQAQNKQNQGSKQPKRFFYCDTCDKTFSSRNGYIIHQRSHTGERPYPCRWCTKAFGDSATRHKHERIHTGERPFKCGRCPKAFNQRAALRAHQVTHTVDRAFLCKHCPSSFPYYATLKRHQQSCHSQTPCPICLQMVADGKVLHDHIKEAHVVDSNLTCTICDSSIFTDVDEFCSHIIWHYKQVPNESEIDTQEEVIANEEEVGLENDPLIEDVVEFETVETSIKQEVIEEEEVNLDDEDFQEEYIEDQDIIGREEVVEQTVVTDDFPITEEAFACDMCGALFQDKELLKEHIPLHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340059;
- 90% Identity
- -
- 80% Identity
- -