Clec001549.1
Basic Information
- Insect
- Cimex lectularius
- Gene Symbol
- -
- Assembly
- GCA_000648675.3
- Location
- NW:1066489-1073100[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0002 0.012 15.4 5.8 1 23 98 120 98 121 0.96 2 18 0.00048 0.03 14.2 0.9 2 23 138 159 137 159 0.97 3 18 2.5e-06 0.00015 21.4 0.7 1 23 165 187 165 187 0.97 4 18 1.2e-05 0.00077 19.2 0.8 1 23 193 215 193 215 0.98 5 18 0.00013 0.0078 16.0 0.5 1 23 222 244 222 244 0.98 6 18 0.018 1.1 9.2 3.1 1 23 250 272 250 272 0.98 7 18 1.9e-06 0.00012 21.7 0.3 1 23 278 300 278 300 0.96 8 18 2.8e-07 1.7e-05 24.4 0.2 1 23 306 328 306 328 0.98 9 18 0.014 0.85 9.6 0.5 2 23 336 357 336 357 0.95 10 18 1.5e-05 0.0009 19.0 1.8 1 23 422 444 422 444 0.97 11 18 0.00017 0.011 15.6 0.2 2 22 447 467 446 467 0.94 12 18 8.8e-06 0.00055 19.6 1.7 1 23 508 530 508 530 0.98 13 18 0.0019 0.12 12.3 0.9 1 23 536 558 536 558 0.98 14 18 8.1e-07 5e-05 22.9 0.2 1 23 564 586 564 586 0.99 15 18 0.0019 0.12 12.3 3.4 1 23 592 615 592 615 0.94 16 18 0.22 14 5.8 0.2 2 23 619 641 618 641 0.94 17 18 0.48 30 4.7 0.2 2 23 648 670 647 670 0.91 18 18 0.004 0.25 11.3 0.0 1 20 769 788 769 791 0.95
Sequence Information
- Coding Sequence
- ATGGCGGAGATGGAGTCTATAGAGGATTGCGGTTTTCGAGAGGAGTTCGTCTTCGTCGAGGAGTACTTCCCGCTGGACCTCCATGAGGAGGAAGTGGTCGCAGAGACGGTCGAGACCGAGGAGGTCGTCGCCGAAGAACAAGAGGAAAACGACGAGGTCATACACGCTACCAATAGTATTTTACCAGAGGGTTATGACCCGATGGATCCAAACCAGTGGGCGCAAGAAGAGGTAATTATTGAATCTTCTGAACCAATaatcaaagaagaaaatgaagagCAAGCTCATGTCTATGAGTGTTACAAATGTGCCAAAAGATTTAACTACAAAGATAAACTATTCAAGCATATGAAATTGCACCATGCAAGAGGAGATGATATGATGATAGAAAGAGATGGCAAAAGAATATGGACATGCACACAATGCGACAAAACTTTCATATCTAGGAAGGGCTCTATTATTCATCAACGGACTCATACTGGCGAGCGCCCTTATTCATGCAGCGTGTGCCAGAAACGTTTCATAGATAGCAGTACATTGATGAAGCATCAGGTGATTCACCAAGCAGTGCGCCCTTTTAGCTGCCTGATTTGTCGAAGAGGCTTCAATCAGAAAGTGGCACTTCAGCGCCACGAGAGGACCCATGGCCAACTTCAGCCGACTTACAAATGCAAATTCTGCCCTAAAACATTTCTGGTAGCGAGCAGTCTACAAGCGcatgaaaaaatacattcagGTATCAAGCCCTACACATGCCAATATTGCCCGAGCCGTTTCCACACATCTACCGCTCAGCGACAGCACGAGAGAGTACATACAAACGAGAGGCCATATGCTTGCAGTTATTGTCCTAAAGCATTCAAAGACAGTGGAACTTTGTTTAAGCATCAAGTCATCCACTCTGGGATTCGACCTTTTGTCTGTCCTATCTGCTCCCAGGGCTTCACACAAAAAGTAGCCCTCCGCAAGCACATTCGATCACATGTGTCAAGAAATCAGGACAACACGTGCGAAATCTGCGCGACACAATATTTCAACAAAGACGACCTTTGTATTCACATAGAAGCCCATATTGAGACCCACCCTTCATTATCACATGTGAGGAATGTTGCGACATCGTCTTTGAAGAAGCAGGAAATGATTCAAGTAACGCCTGTTAAAGCTGCTTCTCCTGAACCAGAAAGAACAGAGGAGAGCGACATGAGCGATCTAGCGACTTTGTGCGACGTCGCTATATCCACAGCCGGCGATTTGGCCCATAGTTACCCATGCCTTCACTGCGGTATGAGCTTCAGGCGGAAAAAGTCGCTCGACTCTCACTTATCGATTCACAGAATGACGTGCAAGTACTGCGAGAGACCATTTCCGGATAAAGCTTCTCTTGAAACTCACGAGCGTAAATTGTGCAACTTGGCAAATTCGGTCCAGCAGCAGCAAGCCCCTAGGCCTTCTACACAGTCTGACCAAGCTCCTACGAAGACCACCACTGTTCAGACAGGGACAAAACAgcccaaaagatttttttactgcGAAAGATGTGACAAAACCTTCAGCTCTAGAAATGGGTATATTATCCACCAAAGGAGTCACACTGGCGAACGGCCTTATCCATGCCGCTGGTGCAACAAAGCTTTTGGAGATTCAGCTACAAGACATAAGCATGAACGAATTCATACTGGAGAAAGACCATTCAAATGTCCTagGTGTCCTCGTGCATTCAACCAAAGAGCTGCACTCCGTGCCCACCAGATAACCCACACCGTCGATAGGGCCTTCTTATGCAAGTATTGCCCATCCTCATTCCCATATTTTGCGACGTTAAAACGACACCAGCAATCGTGTCACAGTCAAATCCCTTGTCCAATCTGCTTCACGTTCGTGCCTGATGGGAAAAAACTGCATAACCACATAAAAGAGGAGCATGCTGTCGAAAACAACCTCTCTTGTACGATTTGCGATTCTGGTATTTTCACTGATGCGGACGAATACTGTGATCACATGGTTTGGCACGGGAAGCAACAACAGCCTAACAAAGACACAACTAGTCAGCATGAAGAGGTACCTATTAACGATGACGAAAGAAACGATGATCAAGACAAAAGCGATGAAATCCAGTTCGAGCAGTTGCATGAAGGAGTTGTTAAAGAAGAAATTGTAGAAGAGGAAACAGAAGAAGTTGTTTTAGAAGAGGAAGAGTTTCACCCTGAGGAATACCAagaagaggaagaggaagaaatGGTTCAAAGGGAAGAAATAATCGAACAGACAATTGTTACCGATGACTTCCCAATCGTCGAAGAGGCTTATCCTTGTGACATGTGTGGAATTCTTTTCCAAGACAAGGAGCTCCTTAAAGAGCACATACCTCTTCATTTCTAG
- Protein Sequence
- MAEMESIEDCGFREEFVFVEEYFPLDLHEEEVVAETVETEEVVAEEQEENDEVIHATNSILPEGYDPMDPNQWAQEEVIIESSEPIIKEENEEQAHVYECYKCAKRFNYKDKLFKHMKLHHARGDDMMIERDGKRIWTCTQCDKTFISRKGSIIHQRTHTGERPYSCSVCQKRFIDSSTLMKHQVIHQAVRPFSCLICRRGFNQKVALQRHERTHGQLQPTYKCKFCPKTFLVASSLQAHEKIHSGIKPYTCQYCPSRFHTSTAQRQHERVHTNERPYACSYCPKAFKDSGTLFKHQVIHSGIRPFVCPICSQGFTQKVALRKHIRSHVSRNQDNTCEICATQYFNKDDLCIHIEAHIETHPSLSHVRNVATSSLKKQEMIQVTPVKAASPEPERTEESDMSDLATLCDVAISTAGDLAHSYPCLHCGMSFRRKKSLDSHLSIHRMTCKYCERPFPDKASLETHERKLCNLANSVQQQQAPRPSTQSDQAPTKTTTVQTGTKQPKRFFYCERCDKTFSSRNGYIIHQRSHTGERPYPCRWCNKAFGDSATRHKHERIHTGERPFKCPRCPRAFNQRAALRAHQITHTVDRAFLCKYCPSSFPYFATLKRHQQSCHSQIPCPICFTFVPDGKKLHNHIKEEHAVENNLSCTICDSGIFTDADEYCDHMVWHGKQQQPNKDTTSQHEEVPINDDERNDDQDKSDEIQFEQLHEGVVKEEIVEEETEEVVLEEEEFHPEEYQEEEEEEMVQREEIIEQTIVTDDFPIVEEAYPCDMCGILFQDKELLKEHIPLHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01108682;
- 90% Identity
- -
- 80% Identity
- -