Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.7 2.7e+03 -1.5 0.0 17 24 9 16 4 20 0.77

2 9 0.017 12 6.0 1.4 6 41 27 58 22 60 0.82

3 9 0.0035 2.5 8.2 0.4 17 39 65 84 58 91 0.87

4 9 0.0045 3.3 7.8 1.7 2 39 79 112 78 118 0.87

5 9 0.00061 0.44 10.6 0.4 17 39 121 140 114 144 0.87

6 9 0.36 2.6e+02 1.8 0.5 17 40 149 169 141 171 0.81

7 9 0.0051 3.7 7.7 0.9 2 41 163 198 162 201 0.87

8 9 0.0041 3 8.0 1.7 6 39 199 229 196 234 0.80

9 9 0.006 4.3 7.4 2.3 3 31 225 252 223 258 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.7	2.7e+03	-1.5	0.0	17	24	9	16	4	20	0.77
2	9	0.017	12	6.0	1.4	6	41	27	58	22	60	0.82
3	9	0.0035	2.5	8.2	0.4	17	39	65	84	58	91	0.87
4	9	0.0045	3.3	7.8	1.7	2	39	79	112	78	118	0.87
5	9	0.00061	0.44	10.6	0.4	17	39	121	140	114	144	0.87
6	9	0.36	2.6e+02	1.8	0.5	17	40	149	169	141	171	0.81
7	9	0.0051	3.7	7.7	0.9	2	41	163	198	162	201	0.87
8	9	0.0041	3	8.0	1.7	6	39	199	229	196	234	0.80
9	9	0.006	4.3	7.4	2.3	3	31	225	252	223	258	0.79

Coding Sequence: ATGACCCACACAGGAGAAAAGCCATTCAAATGTGACATCTGCGATGCCATGTTTGCAGAATTAGGCAAATTGAAAATACATATCAGAACTCACACAAAAGAGAAGCCTTATAAATGTGAAATGTGCGACGCAACGTTCACACAGTCATTCAATTTGAAACTACATATCAGGAGCCACACAGGAGAGAAGCCATACAAATGCGATTTCTGTGATTCTATGTTTAGGTATTCAACTAATTTAAAACGACATATGAGCATCCATTCTGGAGAGAAGCCATATAAATGTGATATCTGCGATACCAATTTTGCACGTGCAAACAGCTTGAAAAGACATATTATGACCCACACAGGAGAGAAGCCATTCAAATGTGATACCTGTGGTGCCACATTTTCGCAGTCAACTAATTTGAAAAATCATATTATGATCCATACAGGAGAGAAGCCATTTAAATGTGATTTCTGCGATGCCGCATTTATTGAATCAAAGAAATTAAAATCACATATTAGAATCCACACTGGAGATAAGCCATTCAAATGTGATTTCTGCGAATCCGCTTTCACAGAGTCATACAGTTTGAAAAGACACATCAAGACCCATACAGAAGAGTCCAAAGGTACTCAAGAAAAGTTCAAATGTGACATCTGCGATTACACGTTTACACGGTCATCCCATTTGAAAAATCATATTATGAGCCATTCAGAAGAAAAGCCATTTAAATGTGATATCTGCAATGCCACATTTAAGTATTCAGGGAGTTTGAAAAAGCATGGGATCATCCACACAGGAGAAAAGCCATTTAAATGA
Protein Sequence: MTHTGEKPFKCDICDAMFAELGKLKIHIRTHTKEKPYKCEMCDATFTQSFNLKLHIRSHTGEKPYKCDFCDSMFRYSTNLKRHMSIHSGEKPYKCDICDTNFARANSLKRHIMTHTGEKPFKCDTCGATFSQSTNLKNHIMIHTGEKPFKCDFCDAAFIESKKLKSHIRIHTGDKPFKCDFCESAFTESYSLKRHIKTHTEESKGTQEKFKCDICDYTFTRSSHLKNHIMSHSEEKPFKCDICNATFKYSGSLKKHGIIHTGEKPFK

Sequence clustering based on sequence similarity using MMseqs2