Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.8 1.3e+03 -0.5 0.4 17 26 60 69 50 83 0.73

2 7 0.0033 2.4 8.3 0.9 17 38 88 106 73 111 0.84

3 7 0.00013 0.093 12.8 2.4 5 40 105 136 101 143 0.83

4 7 0.0063 4.6 7.4 1.1 14 39 141 163 136 167 0.85

5 7 0.0017 1.2 9.2 3.1 11 40 167 192 161 195 0.81

6 7 0.014 10 6.2 0.4 17 39 200 219 192 223 0.85

7 7 0.0012 0.91 9.6 0.8 18 40 229 248 221 250 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.8	1.3e+03	-0.5	0.4	17	26	60	69	50	83	0.73
2	7	0.0033	2.4	8.3	0.9	17	38	88	106	73	111	0.84
3	7	0.00013	0.093	12.8	2.4	5	40	105	136	101	143	0.83
4	7	0.0063	4.6	7.4	1.1	14	39	141	163	136	167	0.85
5	7	0.0017	1.2	9.2	3.1	11	40	167	192	161	195	0.81
6	7	0.014	10	6.2	0.4	17	39	200	219	192	223	0.85
7	7	0.0012	0.91	9.6	0.8	18	40	229	248	221	250	0.89

Coding Sequence: ATGGAAGAAAAAGGTGCGGAAAAGGTAAAGAAAGACGAAGAAAACGATAACAACGAAGACGTCAGTGACATCGAGGTTTTTCTCAAAATCGATTTCAAGGAAGACCCTCAAGTCCAAAATAAAGCTCAAGGATCGTCGATAAGTATCTTCGAAGATGTTGCATTGGGGGAGAAGCCATACAGCTGTGAGGTCTGCGAGAAAAGGTTCCCCTTGGCAACTCATCTTAAGATCCATATGAGAGTCCACACTGGAGAGAAGCCCTACAGCTGCCAAGTCTGCGGGAAGCAGTTTACACAAGCGAGCAACCTCAGAAGCCACACTCGGATCCACACCGGGGAGAAACCGTACAGCTGCGAAGTCTGCGGGAAAAACTTCACACAAGGGAGCAACTTGAGAAGCCACATGCGAATCCACACAGGAGAGAAGCATTTCACATGCGAAGTCTGCGAGAAGAAGTTTACAGAAGCGAAAGCTCTCAGAAGGCACATGAGTTTCCATACCGGGGAAAACCTTTATTGCTGCGAAGTTTGCAATAAGAAGTTCGCCGTCGTCAATAACCTGAGGAGACACATGAGAGTTCACACTGGAGAGAAGCCGTTCACTTGCGAAGTCTGCAAGAAGAACTTTACAGATATCAGCACTTTAAAAGGGCATATGATCATCCACAGCGGGGAAAAGCCCTACAGCTGCCAACTATGCGTTAAAAAGTTCTACAGAGCATCGAATCTCAAGAGCCATATGAGAATCCATAAATAA
Protein Sequence: MEEKGAEKVKKDEENDNNEDVSDIEVFLKIDFKEDPQVQNKAQGSSISIFEDVALGEKPYSCEVCEKRFPLATHLKIHMRVHTGEKPYSCQVCGKQFTQASNLRSHTRIHTGEKPYSCEVCGKNFTQGSNLRSHMRIHTGEKHFTCEVCEKKFTEAKALRRHMSFHTGENLYCCEVCNKKFAVVNNLRRHMRVHTGEKPFTCEVCKKNFTDISTLKGHMIIHSGEKPYSCQLCVKKFYRASNLKSHMRIHK

Sequence clustering based on sequence similarity using MMseqs2