Olae002715.1
Basic Information
- Insect
- Orius laevigatus
- Gene Symbol
- MBD3
- Assembly
- GCA_018703685.1
- Location
- JAGWEN010000275.1:14978-15855[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-22 1.9e-18 65.8 0.0 3 72 6 70 4 75 0.93 2 2 0.0036 21 4.8 0.0 28 58 91 124 74 143 0.73
Sequence Information
- Coding Sequence
- ATGTCGGCTCTGGAGAAAAAACGCTTCGAATGTACGGCTCTCCCGAAAGGATGGCAAAGGGAAGAAGTGACGAGGAAAACGGGATTGTCTGCCGGAAAGATCGACGTCTGCTATTACAGCCCTGAGGGTCAGAAGTTTGACAGTAAACCTCAACTAGTTCGAGCTATCAGCGACACAATCGACCTAACAGCATTCGATTTCTCGACTGGAAAATGTAACAGCTCACTCGTCTCCCGAAGGAATAAAAAGCCAAGAACTAATCAATTCGATTACAGCCGAGGTGTGAGAAACGATACGTCACTTGTCCCTCCAATTAGACAGACGGCGTCCATATTTAAGCAACCGGTGACGTTGTATAGAATGCACGAAGGAAAAACAAATCAGAATTTGGAAAGCATGGAAACCAAGAAAAGCCAAAACAGCTCTTTTGGGAAAAAAGACTAG
- Protein Sequence
- MSALEKKRFECTALPKGWQREEVTRKTGLSAGKIDVCYYSPEGQKFDSKPQLVRAISDTIDLTAFDFSTGKCNSSLVSRRNKKPRTNQFDYSRGVRNDTSLVPPIRQTASIFKQPVTLYRMHEGKTNQNLESMETKKSQNSSFGKKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -