Orus034063.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- sem-4
- Assembly
- GCA_958502075.1
- Location
- OY293308.1:3166632-3174670[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.076 1.4e+03 1.1 0.1 25 37 124 136 109 148 0.72 2 5 0.28 5.3e+03 -0.8 0.0 23 45 153 175 146 182 0.75 3 5 0.00063 12 7.7 0.2 22 48 180 206 174 210 0.85 4 5 5.4e-05 1 11.1 0.1 21 46 207 232 203 234 0.92 5 5 1.7e-05 0.31 12.8 0.0 21 52 235 266 233 268 0.94
Sequence Information
- Coding Sequence
- atggacatgGAGGCGTATGATGGGGATTTTCACCCTTCCCTTGAGCCCATGGTTATAATAAACAGTCAAGATGACGAGGAAGAAAATAATTCAAATTTCGACTTCGCCGACAACAACCACCTCCCAAATATCAGCCCCGAAGTATCTATAATTCCTGTaaagaaaaaacagaaaaacaccattaaaataaaactattcGGCAACCATTTCTCCAATCAACGTAAAGAAAATAGGTTGTTTGATGATAGCGAGGACTATGTGGATATTAACAAAAAAGCCAGAGGAGCACGAAATCCTGTGCGATTAATAACAAAAGAAGAAGCCTCTACTGCTGAAGATTCCTACGCAAAACGCAAAAGCAGTCCTTTGGAAAAGTGCCCTGTATGTAAAAAGTTCTTCAGAAGAATGAAAACGCATCTGTTGAAGCATGAGGTTATTCAAAATCAGGAGCAAAGTCAGGGGTTGATTTGTGGTTTTTGTAATAAGGCGTTTAATAGTCAAAGCAATTTACAAATACACATGAGGACCCATACAGGGGACAAGCCTTATATTTGTGAGGTTTGTCAAAAGTCGTTTTCGCAGAGTTGCAATTTGGTTAATCACATGAGGATTCATACAGGTGAAAAACCTTTCAAATGTCCGCACTGCGATCGAGCCTTCACCCAATCGGGCAACCTAAACAATCACATTCGTCTTCACACGGACGAGAAACCCTTCAAGTGTCACTTCTGCGACAAGGCCTTTGTGCAGAGCGGCAATCTTAGTTCGCACATTAAAAACAATCACTGGTCGAAACCGAAGGCCTTTCCGGAGGTGATTATATCGTAG
- Protein Sequence
- MDMEAYDGDFHPSLEPMVIINSQDDEEENNSNFDFADNNHLPNISPEVSIIPVKKKQKNTIKIKLFGNHFSNQRKENRLFDDSEDYVDINKKARGARNPVRLITKEEASTAEDSYAKRKSSPLEKCPVCKKFFRRMKTHLLKHEVIQNQEQSQGLICGFCNKAFNSQSNLQIHMRTHTGDKPYICEVCQKSFSQSCNLVNHMRIHTGEKPFKCPHCDRAFTQSGNLNNHIRLHTDEKPFKCHFCDKAFVQSGNLSSHIKNNHWSKPKAFPEVIIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01107901;
- 90% Identity
- iTF_01107901;
- 80% Identity
- iTF_01107901;