Orus042625.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- -
- Assembly
- GCA_958502075.1
- Location
- OY293310.1:33009810-33012153[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0012 22 6.9 0.0 26 44 172 190 163 196 0.88 2 8 0.0067 1.3e+02 4.4 0.1 20 45 202 227 192 236 0.82 3 8 0.0052 99 4.8 0.0 21 46 239 264 232 270 0.82 4 8 0.0041 78 5.1 0.0 21 48 267 293 263 300 0.86 5 8 0.22 4.1e+03 -0.4 0.0 23 46 325 348 317 354 0.78 6 8 0.09 1.7e+03 0.8 0.1 21 47 351 377 342 383 0.79 7 8 0.00016 3.1 9.6 0.1 20 48 378 406 370 410 0.83 8 8 0.0059 1.1e+02 4.6 0.1 21 44 407 430 403 437 0.90
Sequence Information
- Coding Sequence
- ATGACTGAAAAAATGTGTAGACTGTGCCTGGCAGAGTCTGGCAATTTTCAAACAGTTTTCACAGCCATAAAATTGCCAGAATGTGAACAAACATTGTATTTAACTGATATGATTAGTGAGTTTACTAGAATTAAgATTGAACAAGGTGACAGTCTTCCAGACCAAATCTGTCACACATGCACCCAGGACACCATAAATACCTACTTTTTCAAGCTACGCTGTGAAGAAAACGACGCCATTCTTCGAAAAAAACTCGAAACTACCACCAAAGACAAccaaattgatttatttgaagataAATCCAAATTCGAATGCCACATTTGCCCAAAAAAATTTTCCAGAGAAGATCTACTTTTACGACACAAAATAGCGCATGTGTTGCGCTTGCAGAAGGATGTTGAGGAAAAAAACGAGTCTCCTTCGGAACGGATTGAGATTGAATGTTTCTCTGATGCAGTTGGTAAGGACGTGGAGGATTTGGAGGACAAGGAAACATCCCATAAAGAAAATTATCCGTGTCCTTTTTGCTTTATGGTGTATTCCAAAAAAGGCAACTTGGATAAACATTTGTTTGTACATACTAGTGATACAGAGGCGGAGGATCAGGACAAGGATAAATATTCGTGTGACCATTGCAGTTTGACTTTTAGATCTAAAAAGGACGTCAGGCGGCATCTTAGGAAGTTTggtttgttttcgaaaaaagaGTGCCCAAGTAAAAAGGCTCACATTTGCGAATTTTGCTTTAAATCCTTCAACCAAATTTCCAACTTAAAAGATCATCTGAGAACTCATAGTGGGGAAAAGCCATTTCTCTGTCCAACTTGCGGCAAAGGATTCAATCAATTGGGAAATCTACATCAACACCAAGTTAGGCATAGTGGAGTAAAATCTCATGTTTGTACCACTTGTGGCCATGGCTTTGCTAGTAAGGGGGAGTTGAGTGCGCATCTCAGAAAACACACAGGGGCCAGGCCGTTTGTTTGCGACATTTGCGGCAAGGGTTTCACCGCCTCATCCTCCCTAACAAAACACAAACGTATTCATTCCGGTGAAAAACCCTATCAATGCGAATATTGCAATATGAAATTCTCCAGATCTGGTATTCTAAGTCGTCATCGACGAATTCACACCGGCGAAAAACCCTACGTCTgcaaaatttgccaaaaagcgTTTACTCAGTCAAATGATTTGAATTCGCATATGCGAATTCACACAGGGGAGAAACCCTATAAATGTGAAGAATGCGGGCAGATGtttcgacaaaattccgcttTGAGGACGCATAAAAAGACACATTTGGTACCGAAACAACACAGGCATAGTATGAAAAAAGTGGAGGTTTTTGTGGAGGATGAGGAAAATATTATTGGGAAGTTCTCAGTAATTGGTGAGGATGTCTAA
- Protein Sequence
- MTEKMCRLCLAESGNFQTVFTAIKLPECEQTLYLTDMISEFTRIKIEQGDSLPDQICHTCTQDTINTYFFKLRCEENDAILRKKLETTTKDNQIDLFEDKSKFECHICPKKFSREDLLLRHKIAHVLRLQKDVEEKNESPSERIEIECFSDAVGKDVEDLEDKETSHKENYPCPFCFMVYSKKGNLDKHLFVHTSDTEAEDQDKDKYSCDHCSLTFRSKKDVRRHLRKFGLFSKKECPSKKAHICEFCFKSFNQISNLKDHLRTHSGEKPFLCPTCGKGFNQLGNLHQHQVRHSGVKSHVCTTCGHGFASKGELSAHLRKHTGARPFVCDICGKGFTASSSLTKHKRIHSGEKPYQCEYCNMKFSRSGILSRHRRIHTGEKPYVCKICQKAFTQSNDLNSHMRIHTGEKPYKCEECGQMFRQNSALRTHKKTHLVPKQHRHSMKKVEVFVEDEENIIGKFSVIGEDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01107807;
- 90% Identity
- iTF_01107807;
- 80% Identity
- iTF_01107807;