Orus017181.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- MBD-R2
- Assembly
- GCA_958502075.1
- Location
- OY293304.1:78204219-78226691[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-19 3.1e-15 57.2 0.0 7 71 61 124 55 130 0.92 2 2 1.3 1.9e+04 -3.0 0.0 48 58 225 235 223 241 0.77
Sequence Information
- Coding Sequence
- ATGAATCCATTTGTAGCATTACAAGTAGCTCCGTTTCATGTGAAGACGGATTATATAGCAGGCAAAGCTGTTGAAACATTATGTGGTAATCTGCAATCAAACGACTGGGAGAATGGCAAACCAGTTGGAATAGACTCAACTATAGAATTAACGGATGGATTGAGGAAGTCCGTTGTTGTACCAGATCCTAGATTACCGCCAGGTTGGACTAAACATCTATCTCAAAGAATTCAGGGAACTTCCATTGGTAAATGGGACGTTATTGTTCTAGCGCCCGACGGAAAGAAATTCCGATCAAGAAATGAAGTCAGAAATTATTTGGACCTACATCCGGGAGTAGAGGCGAGGGAAGATATGTTTGTGTTTAATATTTATCGGGGCCATGGAAGACGAAGAGCTGGTCGTACGAAAAATAGATCATCTGTTGTTCCGGAACCACAACCTCCAATGGAACAACCATTGCTTGAAGGAAAGAATGATGAAACTGAGATGCAGGAAGAAGCTATGCCAGAATTTACAGCCTTAGAAACATCATCACCACTAGTCGAGAAACCAGAATCGGCATTGAAAATTATCTTTGAAAACAATTCATATAGATGCCCCATAGAAGGATGCGGAAAAAATTTTCGGCGGGAAAATTTGGCTTTGATGCATGTGAAGCACTATCATCGAGAATATACGAAGTATTTGGATTCGACGCCAAATGTGGCTGACTTGGCATATGCTAGAACAGTGAACGATAGTTTGGAAAAATCTACTAAAAGAAATAAAGCAGAAAAAACTTCAGGTAACAACGAAGTATATAAAACTGTGTGA
- Protein Sequence
- MNPFVALQVAPFHVKTDYIAGKAVETLCGNLQSNDWENGKPVGIDSTIELTDGLRKSVVVPDPRLPPGWTKHLSQRIQGTSIGKWDVIVLAPDGKKFRSRNEVRNYLDLHPGVEAREDMFVFNIYRGHGRRRAGRTKNRSSVVPEPQPPMEQPLLEGKNDETEMQEEAMPEFTALETSSPLVEKPESALKIIFENNSYRCPIEGCGKNFRRENLALMHVKHYHREYTKYLDSTPNVADLAYARTVNDSLEKSTKRNKAEKTSGNNEVYKTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -