Orus036414.1
Basic Information
- Insect
- Orchestes rusci
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958502075.1
- Location
- OY293308.1:34578809-34592327[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-104 1.1e-99 335.1 20.6 1 300 79 381 79 381 0.95 2 2 0.13 7.7e+03 -2.5 0.8 141 160 400 419 382 436 0.39
Sequence Information
- Coding Sequence
- atgattgtGTTCGGTGTTAGTTTCTGCGGTTCACGTGTCGTCGCCGCCCCCGTTATATTACAAGATAAAAATCATCTCGAGAAAATGATCACATTGAATGTGATTCAAGAAAATGAACCCATGCCAAAGCTACTTTTTGGGAAATCAAGATCAAGTCCATCTTTGTCGGACTGTCTTCTAGACAATGATGATGGGATTTTATCAGTTaccaaaatttcatttctgaagaaaaatGCGGAAGCTCGTTTGGCCGCAAGAAGACAGGCACGTGCCGAAGCTCGCGAGATTCGCATGCGTGAGCTGGAACGTATGCAAAAAGAGCAAGAAGAGAATGCTGATCGACAATTTGACATGTTGCAAGTAGCTAACTCTTCCACTGACGCCTCCACTTGGGTGCATCCGCGGATGACAGTAACGATGCCCACAACAGGAAGACCAGCTTCGGCCACCCGGCATCGGCCAGCCTCCCGACGAAATTCTGAAGACTCTTTGGAAGATGGTGGAGGTGGAAGCAGTTTGAGAGATTTGAGGgCCGAACTGAAGGATGTAGAAGAACGCTTCAGAAAGGCGATGATCGCAAACGCGCAACTGGATAATGATAAAGCATCTCATACATATCAGCTTGAGCTTCTGAAAGATAGATTGGAAGAATTAGAGGAAGATAATTCGCAGCTGAAACGTGAACATCGGGATAAATGCCGAGAGCATGAACAGCTCAAAAGGTTATGTCAGCAACTTAAGGACGATCTGAAAGCGTATACATTTGCTCTTGAAGAAAGGGATAAATTAATTGAGGAAAAGGGGCTGGTGATCGTGCAGTGTGACGAACCGGGGGAAGGTGGAGAACCAGGCCGCAAGGCTTTAATTCAGGCAGAAAACGCGAAGTTGTTGGAAGGAGCGGACGGCAGCCTTGATGTTCGGTTAGCAAACTTCGCGAGAGAAAAGTCGGATCTTCAAGATGAGATCAGTAGTCTGAAACTAGAACTTGAAGAAGAGCGCAGTAGACGTCGAAAGTCTTCTGGTGGTGGAAGTCTCAATGGTCCTTCTTTCGACTATGACCCAGATGATCTTCATCGAGAAGCGAGCAAGCAGTTGGCCGACTTTAAGTTTCGGGCCCAGAAGGCGGAACAGGATGTGGCAACACTGCAAGCTACGGTAGCAAGATTGGAAAGTCAAGTGATACGATATAAAACGGCAGCTGAAGTGAGTGAACAAAGTGAGGAAGCTCTGAAAGCGGAGAAGCGGAAGCTGCAGAGAGAGgaCACGTCCGATTCCATTTCCGATATTACTTCTGAATCGGATGACAATTCTCGTTTTGATTATTCTTAG
- Protein Sequence
- MIVFGVSFCGSRVVAAPVILQDKNHLEKMITLNVIQENEPMPKLLFGKSRSSPSLSDCLLDNDDGILSVTKISFLKKNAEARLAARRQARAEAREIRMRELERMQKEQEENADRQFDMLQVANSSTDASTWVHPRMTVTMPTTGRPASATRHRPASRRNSEDSLEDGGGGSSLRDLRAELKDVEERFRKAMIANAQLDNDKASHTYQLELLKDRLEELEEDNSQLKREHRDKCREHEQLKRLCQQLKDDLKAYTFALEERDKLIEEKGLVIVQCDEPGEGGEPGRKALIQAENAKLLEGADGSLDVRLANFAREKSDLQDEISSLKLELEEERSRRRKSSGGGSLNGPSFDYDPDDLHREASKQLADFKFRAQKAEQDVATLQATVARLESQVIRYKTAAEVSEQSEEALKAEKRKLQREDTSDSISDITSESDDNSRFDYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -