Ocom074711.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068992.1:30276736-30281914[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0063 6.3e+02 3.0 0.0 20 43 55 78 47 82 0.80 2 9 0.012 1.2e+03 2.1 0.2 19 32 82 95 77 112 0.80 3 9 0.00027 27 7.4 0.1 22 47 113 138 107 143 0.82 4 9 0.0005 50 6.5 0.0 22 46 141 165 135 170 0.88 5 9 5.2e-05 5.2 9.7 0.0 19 47 194 222 184 227 0.84 6 9 0.00076 76 5.9 0.0 21 46 224 249 221 255 0.87 7 9 0.00041 41 6.8 0.1 22 46 281 305 276 308 0.91 8 9 0.00014 14 8.3 0.1 23 51 336 364 330 366 0.85 9 9 0.012 1.2e+03 2.1 0.0 22 45 363 386 358 392 0.87
Sequence Information
- Coding Sequence
- atggaTTGTCCTGCTGATGTAATACAAAACAATTTGTATTCAATAAAACAGGAAGAAAATGATAATATATGTACAGATCGTTTTCAACAAACCTATTCTAAAACTGAGAGTGCCTGGATAAGTGATAATGAAGTTCAAGTAAAGTTAAGAAACCCATCAAGAAAAGGTGAAAAACCGTTCAAGTGTGATATTTGTTCAAGATCTTTCAGAGAAAAAGGTAAATTAGTTCAACATAAACGAATTCACCAATCTGATAATCCATTCAAGTGTCGAATTTGTTCAAAATCGTTTGAAGTGAGAAGTAAGTTAGTGACTCACATGCATTCTCACGCGGCCGAAAAACAATTCAAATGCGAGATTTGTTCGAAATGTTTCAGCCAGGAAGGCAATTTGAAAAGACACTCGCGAAtccacacaggcgataaaccgtTCAAATGCGATATTTGTTCCAAACTATTTACCCAAAAAGCCAATTTAGTGTACCACTTGAGTGTCCATACAGGTGTGAAGCAATTAGAGTGTGACGTTTGTTCGAAATCGTTTTGGACCAACGGAACGTTAGTTCAACATAAACGCGTTCACCAATCTGATAAACCTCTTAAATGTGAGATTTGTTTAAAGGGTTTTAGCCGTCCGAGCAATCTGAAGAAACATATGCTCATTCACacaggcgaaaaaccattcgAATGCGATATTTGTTCCAAATCTTTTACCCGTAAAAGTGATTTAAACCGCCACCTGAGTGTCCATACAGGTGTAAAGCAGTTCAAGTGTGACATTTGCGAGAAATCGTTTTGGACTAAAAGCGTATTGGTCAGACATAAATatattcacacaggcgataaaccattccaATGTCAAATTTGTTGTAAATCTTTTAGAGGAAACACAGAACTCGTTCGTCACTTGAACGTCCACGAAAAACAATATAGATGTGAATTTTGTTCGAAAGCCTTTAAAGTAAGGCTACACTTGGACATGCACGTTTGTAAAAACGCAGGCGGTAAACCGTTTAAgtgtaaaatttgttttaaatctatCAGCCATCGAAATTATTTAAGGCAACATATGAGTATTCACACGGGCGATAAACCGTTCAAATGCGATATTTGTTCCAAATCCTTTAACCAAAAAAGTGGTTTAAATTACCACCTGAGTACCCATACGGGTGTTAAGCAGCATTTGTGA
- Protein Sequence
- MDCPADVIQNNLYSIKQEENDNICTDRFQQTYSKTESAWISDNEVQVKLRNPSRKGEKPFKCDICSRSFREKGKLVQHKRIHQSDNPFKCRICSKSFEVRSKLVTHMHSHAAEKQFKCEICSKCFSQEGNLKRHSRIHTGDKPFKCDICSKLFTQKANLVYHLSVHTGVKQLECDVCSKSFWTNGTLVQHKRVHQSDKPLKCEICLKGFSRPSNLKKHMLIHTGEKPFECDICSKSFTRKSDLNRHLSVHTGVKQFKCDICEKSFWTKSVLVRHKYIHTGDKPFQCQICCKSFRGNTELVRHLNVHEKQYRCEFCSKAFKVRLHLDMHVCKNAGGKPFKCKICFKSISHRNYLRQHMSIHTGDKPFKCDICSKSFNQKSGLNYHLSTHTGVKQHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01106601;
- 90% Identity
- iTF_01106601;
- 80% Identity
- iTF_01106601;