Ocom022518.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068980.1:56837680-56842618[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.11 39 7.3 0.1 2 23 27 48 26 48 0.89 2 17 0.13 46 7.1 2.4 1 23 54 76 54 76 0.98 3 17 0.013 4.7 10.2 2.6 1 23 82 104 82 104 0.94 4 17 0.018 6.4 9.8 1.7 1 23 110 133 110 133 0.97 5 17 0.00026 0.094 15.6 1.5 1 23 145 168 145 168 0.96 6 17 4.5e-05 0.016 18.0 0.3 3 23 179 199 177 199 0.97 7 17 7.7e-05 0.028 17.2 0.4 1 23 205 227 205 227 0.97 8 17 0.029 11 9.1 1.0 1 14 233 246 233 250 0.85 9 17 0.011 3.9 10.5 0.1 3 23 352 372 350 372 0.95 10 17 0.71 2.6e+02 4.7 5.9 1 23 378 400 378 400 0.97 11 17 0.0036 1.3 12.0 2.2 1 23 406 428 406 428 0.90 12 17 7.6e-05 0.028 17.2 2.5 1 23 434 457 434 457 0.98 13 17 0.00013 0.047 16.5 1.7 1 23 469 492 469 492 0.94 14 17 0.018 6.6 9.8 3.0 3 23 503 523 502 523 0.99 15 17 5.7e-05 0.021 17.6 1.7 3 23 531 551 529 551 0.97 16 17 5.6e-06 0.002 20.8 1.0 1 23 557 579 557 579 0.98 17 17 0.00013 0.047 16.5 0.0 3 22 587 606 586 606 0.95
Sequence Information
- Coding Sequence
- ATGACGAGAAAACaatcaaacaataaaaagaatacTGGAAAGTCTTCTATACTTCCAGTTAAGCTGGAAATACCTCTGGTTTGTTTGTATTGTAACACGGAATTCTACACGAATGTGGAGTACGCCTTGCATTCAATAGATCATAGACAAGATCAAAAATACTCTTGCCATTTTTGTGAATACACCAATAACTCCAAGTATCGTCTAGAAGCCCACGTTAGAGCCCATGAAGGTTCCTCCAAGTACCGATGTGAGATTTGCAATAAGCCTTTTAATATAAGTACCCATGCCAAGGAACACAAGTATTACCATACAGGAGAAAAACCTTTTCAATGCGATATATGTGGCGGCCATTTTATGTTTTCGAGGATTTTGACCAAACACAGGCGGTCGGCACACTATGAAGTCATTTTTGGAAAACCTCTGTCAAAATACGATTGTAAAGTATGCAACAAGCATTAcgagtcacttcccggacttcaGCGACACATGTACAGCAACCACAACGACACAGGAGCAGATTGGTCAGTAATTTGTGATATATGCGGAAAGAAAATAGCttcaaaagaaaaattgaaataccaTCTACGAACTCATACCGGAGACAGACCTTTTGCTTGTGTTTTTTGTCCTAGAAGATTCCCAAAAAAAGATCAACTCAAGGAACATGAAAGGGTACATACGGGCGAAAAACCGTTTACTTGTTCATATTGCGGGAAGAATTTCGGACACAGAGCGCCATTTAGGACGAGCCCTACCTCTGAGGTAAAGATAGAATATGTAGAGGATGATTTTGATTCCGAAACTGAATGGATTCCCAAAGAGGAGAAAatcaaaaagtcaaaattaCTTAAGGAGAAGCTGAGGAAAGAAAAGAGGGAGTTGAAGGAGCGGCTGAGAAAAGAAAAGAGGTCGTTGAAAGACGATAGAAAGCTAAAGAAACCAAAGAAGGATAAAAAAGACAAGAAAGTCAAGAGAGAGAAGAAAGAGAAGAAAAGAAAGCAACTTAGTGAAGATCATCCGCCGGTGGCTGAACTGAATGAGCCAATTATATGCGATGTGTGCGAACAAACGTACAAAAATAACGTAGAATTTGCCTTACATTCCATAACTCATAGCGAAGATGGTAAATACCATTGTCATTTGTGTTCATATCGAAATGCCTCAAAGTATCACCTCGAGATGCACGTGAGAGCCCACGAAGGTGCCACCAAGtacaaatgcgaaatttgtaaTAAAGCTTTTACCGTTAGTACGCATGCTTTGGAACATAAATACTTTCACACCGGTGAAAAGCCGTTCCAATGCGAAATATGCGGGAAGCATTTTATGTTCTCTTGGTTCTTGGCTTCGCATAGACGAACATCACATTACGAAATATTAACGGGTAACCCGTTGGTTAAATTCGACTGTACCATTTGTAACAAACATTACGCTTCTGCGTCAGGTTTGCGAagacataacctcaaaaatcaCAATGAAACGGGGGTTGATACGTCTGTGCTTTGCGATATCTGCGGCAAACAATTATCTAGTAGAGAAAAACTAAAATTCCACCATCGCACTCACACGGGCTATAAACCTTACGGATGCCAAACGTGTCCGAagcatttttccaaaaaagaaCAACTCATTGAACACACCAGAGTACATACAGGTGAAAAGCCATACGTGTGTAAGTATTGCGAGAAAGCCTTCACCCAAAGAACCCCTCTACGTATCCACGAGAGAAGGCATACTGGCGAAAGACCAAACATTTGCCCAATATGCGGTATAGGTTTCATTTCCAAAACCGCCCTGGAAAGCCACATCAGAAGTTGTTGTAACAGTTCACAAATCTTAATACCCGAAGCTATGCCGTTGCCTTACCATTCTTTTTACACTTCACACTCCACTCTAACGACTCCCATGACTCCCGGCTCAGAAGCATCAGAGTTAGAACACAAATTTTCGCTTTCTGATGCTTTTCTCGACCCCCGACAGCACGTCGACGTTATTGGACACATTACTCCCATGTAA
- Protein Sequence
- MTRKQSNNKKNTGKSSILPVKLEIPLVCLYCNTEFYTNVEYALHSIDHRQDQKYSCHFCEYTNNSKYRLEAHVRAHEGSSKYRCEICNKPFNISTHAKEHKYYHTGEKPFQCDICGGHFMFSRILTKHRRSAHYEVIFGKPLSKYDCKVCNKHYESLPGLQRHMYSNHNDTGADWSVICDICGKKIASKEKLKYHLRTHTGDRPFACVFCPRRFPKKDQLKEHERVHTGEKPFTCSYCGKNFGHRAPFRTSPTSEVKIEYVEDDFDSETEWIPKEEKIKKSKLLKEKLRKEKRELKERLRKEKRSLKDDRKLKKPKKDKKDKKVKREKKEKKRKQLSEDHPPVAELNEPIICDVCEQTYKNNVEFALHSITHSEDGKYHCHLCSYRNASKYHLEMHVRAHEGATKYKCEICNKAFTVSTHALEHKYFHTGEKPFQCEICGKHFMFSWFLASHRRTSHYEILTGNPLVKFDCTICNKHYASASGLRRHNLKNHNETGVDTSVLCDICGKQLSSREKLKFHHRTHTGYKPYGCQTCPKHFSKKEQLIEHTRVHTGEKPYVCKYCEKAFTQRTPLRIHERRHTGERPNICPICGIGFISKTALESHIRSCCNSSQILIPEAMPLPYHSFYTSHSTLTTPMTPGSEASELEHKFSLSDAFLDPRQHVDVIGHITPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00026287;
- 90% Identity
- iTF_00911320;
- 80% Identity
- -