Aaln001527.1
Basic Information
- Insect
- Agelastica alni
- Gene Symbol
- -
- Assembly
- GCA_950111635.2
- Location
- OX467708.1:12332211-12342870[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.94 2.3e+02 4.2 1.2 2 23 51 72 50 72 0.91 2 17 0.48 1.2e+02 5.1 2.8 1 23 78 100 78 100 0.97 3 17 0.0006 0.15 14.2 1.4 1 23 106 128 106 128 0.97 4 17 0.0012 0.28 13.3 2.4 1 23 134 157 134 157 0.98 5 17 0.00023 0.057 15.5 1.5 1 23 169 192 169 192 0.96 6 17 8.1e-05 0.02 17.0 0.2 3 23 203 223 201 223 0.97 7 17 0.00017 0.041 16.0 0.3 1 23 229 251 229 251 0.96 8 17 0.054 13 8.1 0.6 1 14 257 270 257 274 0.85 9 17 0.035 8.6 8.7 0.0 3 23 375 395 373 395 0.93 10 17 0.65 1.6e+02 4.7 5.9 1 23 401 423 401 423 0.97 11 17 0.003 0.74 12.0 1.9 1 23 429 451 429 451 0.89 12 17 6.9e-05 0.017 17.2 2.5 1 23 457 480 457 480 0.98 13 17 0.00021 0.052 15.6 1.7 1 23 492 515 492 515 0.94 14 17 0.017 4.1 9.7 3.0 3 23 526 546 525 546 0.99 15 17 2.5e-05 0.0063 18.6 1.1 3 23 554 574 552 574 0.97 16 17 3e-07 7.5e-05 24.6 0.8 1 23 580 602 580 602 0.99 17 17 1.1e-05 0.0028 19.6 0.0 3 22 610 629 609 629 0.95
Sequence Information
- Coding Sequence
- ATGACAAACAATTACGTCTGGGACCATCTATTGGTGAAACCCCGCAAAAAATGTAatccaaaacaaaattctaactCCCCCAAAATCGCACCGATTAGAAAAACCAAGAAAAGGTCATCAATTCTTCCGATACAATTGGAAATACCTTTAGTGTGTTCGTATTGCTGTCGCAAATTCGACACGAACGTCGAATTCGCTCTGCATTCCATCGAACACACTGTCGACAGAAAATACTACTGTCACTTTTGCGAATACACCAACAGTTCCAAATATCGCATGGAAGCCCACGTACGTGCCCACGAAGGCTCTTCGAAATACCGATGCGAGGTATGCAACAAACCTTTCAGCATTAGCACCCACGCCAAGGAACACATAAActttcacactggcgaaaaaccttttcagtgcgaAATTTGCGGCAATCATTTCATGTTTTCCAGAGTTCTGACTAAACACAGGCGGTCGGCTCACTACGAAATCCTTTTCGGAAAACCGTTGGTGAAGTACGATTGCAAGGTATGCAACAAACATTACGAGTCGTTGCCCGGTCTGCAACGCCACATGTACAGCAACCACAACGATACAGGAGCGGACTGGTCTGTAATTTGCGACATTTGCGGCAAAAAGATCGCCTCTAAAGAAAAACTGAAGTATCATGTGCGCACCCACACCGGAGATAGACCGTTCGCTTGCGTTTCTTGTCCCAGAAAGTTTCCCAAAAAGGATCAACTCAAGGAACACGAGAGGGTGCATACgggcgagaaaccgttcaatTGCATGTATTGTGGTAAAAGTTTCGGACACAGAGCGCCTTTTAGGTCGACAATAATTCCCGATATAAAACTCGAGACAGAGGAATATGAATTCGAATCGGAAACCGAATGGATTCCACGggaggaaaaattaaaaaagaccaAACGTTTTAAGGAGAAATTGCGAAAAGAGAGGAGGGAATTAAAGGAGCAGCTCAAAAAGGAGAGAAAACTGAAAGACGGTACAAAAGCGAAGAAACCAAAAAGGGATAAGAAGGAGAAAAAAGAGAAGAAGGAGAAGAGAGAGAAGCGCCGAAAGAGGAGCACCGACGAACATCCACCGCTGGCCGAATTAGACGAGCCTATCATCTGCGACGTATGCGAGCAAACGTACAAGAACAACGTGGCGTTCGCATTGCATTCCATAGTACACAGCGATGACGGCAAGTACCATTGCCACTTGTGCTCCTACAGAAACGCCTCGAAGTACCATCTCGAGATGCACGTCAGGGCGCACGAGGGCGCCACCAAATACAAATGCGAAATTTGCAACAAAGCCTTTACAGTCAGCACGCACGCCGTCGAACACAAATACTTCCACACCGGCGAGAAGccgtttcagtgtgaaatatgCGGCAAACATTTCATGTTCTCGTGGTTCTTGGCATCTCACAGACGCACCTCGCACTATGAAATACTCACCGGCAGCCCTCTGGTCAAATTCGACTGTACCGTTTGCAACAAGCACTATGCTTCTGCTTCTGGTCTGCGAAGACACAACTTGAAAAACCACAACGAAACAGGAGTAGATCTATCCGTGTTGTGTGACATTTGTGGCAAACAGCTCTCCAGTAGGGAGAAATTGAAGTTCCACCATCGCACCCACACCGGGTACAAGCCGTACGGGTGTCAAGTGTGTCCCAAACATTTTTCTAAAAAGGAGCAACTCATCGAACACACCAGAGTGCATACGGGTGAAAAACCCTACGTGTGTAAATATTGTGGCAAAGCTTTCACACAAAGAACTCCGTTGCGCATTCACGAAAGAACCCACACCGGCGAGAGACCGAACATTTGCCCGATTTGCGGCAAGGGATTCATTTCCAAAACTGCGCTCGAAAGCCACATCCGAAGTTGTTATAATAATTCACAAATCCTCATACCGGACGCCGTCGTGCCCTTGCCCTATCACTCTTTTTATGCGCCAAGTACCACTCCTATGACGCCCATGACGCCGGCATCCGAAGTCTCGGAAATGGAACACAAATTTTCATTGTCTGACGCTTTTCTCGACCCTCGACAGCACGTCGATGTCATTGGACACATAACTCCTATGTAA
- Protein Sequence
- MTNNYVWDHLLVKPRKKCNPKQNSNSPKIAPIRKTKKRSSILPIQLEIPLVCSYCCRKFDTNVEFALHSIEHTVDRKYYCHFCEYTNSSKYRMEAHVRAHEGSSKYRCEVCNKPFSISTHAKEHINFHTGEKPFQCEICGNHFMFSRVLTKHRRSAHYEILFGKPLVKYDCKVCNKHYESLPGLQRHMYSNHNDTGADWSVICDICGKKIASKEKLKYHVRTHTGDRPFACVSCPRKFPKKDQLKEHERVHTGEKPFNCMYCGKSFGHRAPFRSTIIPDIKLETEEYEFESETEWIPREEKLKKTKRFKEKLRKERRELKEQLKKERKLKDGTKAKKPKRDKKEKKEKKEKREKRRKRSTDEHPPLAELDEPIICDVCEQTYKNNVAFALHSIVHSDDGKYHCHLCSYRNASKYHLEMHVRAHEGATKYKCEICNKAFTVSTHAVEHKYFHTGEKPFQCEICGKHFMFSWFLASHRRTSHYEILTGSPLVKFDCTVCNKHYASASGLRRHNLKNHNETGVDLSVLCDICGKQLSSREKLKFHHRTHTGYKPYGCQVCPKHFSKKEQLIEHTRVHTGEKPYVCKYCGKAFTQRTPLRIHERTHTGERPNICPICGKGFISKTALESHIRSCYNNSQILIPDAVVPLPYHSFYAPSTTPMTPMTPASEVSEMEHKFSLSDAFLDPRQHVDVIGHITPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01106619;
- 90% Identity
- -
- 80% Identity
- -