Ocom088288.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068995.1:46202515-46222699[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00031 0.11 15.3 1.0 2 23 237 259 237 259 0.97 2 21 0.0079 2.9 10.9 1.3 1 21 362 382 362 383 0.95 3 21 0.12 42 7.2 8.2 1 23 412 435 412 435 0.92 4 21 3.5 1.3e+03 2.6 0.0 6 20 446 460 446 462 0.94 5 21 0.026 9.6 9.3 0.3 1 22 468 489 468 491 0.90 6 21 0.0001 0.038 16.8 0.8 2 23 566 587 566 587 0.97 7 21 0.26 93 6.2 0.1 1 22 630 650 630 652 0.80 8 21 0.00095 0.35 13.8 0.3 3 23 657 677 656 677 0.97 9 21 0.011 3.9 10.5 0.2 3 21 708 726 708 730 0.92 10 21 0.0018 0.67 12.9 0.2 1 23 752 775 752 775 0.97 11 21 0.0019 0.69 12.9 1.9 2 23 789 810 788 810 0.97 12 21 0.0024 0.89 12.5 8.3 1 21 839 859 839 861 0.94 13 21 0.0015 0.53 13.2 0.2 3 23 878 899 877 899 0.94 14 21 0.00019 0.07 16.0 0.7 1 23 916 938 916 938 0.97 15 21 0.0016 0.57 13.1 0.8 2 23 950 972 949 972 0.96 16 21 3.4e-05 0.012 18.4 1.0 1 23 987 1009 987 1009 0.95 17 21 1.6 5.8e+02 3.6 0.0 1 23 1053 1076 1053 1076 0.94 18 21 0.00024 0.085 15.7 1.4 2 23 1087 1108 1087 1108 0.97 19 21 2.7e-05 0.0098 18.7 0.9 1 23 1141 1164 1141 1164 0.97 20 21 5.3e-06 0.0019 20.9 1.1 1 23 1172 1194 1172 1194 0.98 21 21 0.00071 0.26 14.2 0.1 1 23 1209 1232 1209 1232 0.97
Sequence Information
- Coding Sequence
- ATGGTAGAAGCAGAAATCGTCGCTGATTTCCAATCATGTTGTAGACTGTGTCTCACCGAAATTGTGGAAAGTATTAAGTCAATATTCGATGAAACCATTGAAGACAGAAAGTTATCGGAAAAGATACACCAATCGGTTGCTATTCAAATAAACTGTTCAGATAAATTGTCAACGAAGGTTTGTGAATCATGTATAGAAAAAGTAGATGGTTGGTATGCATACAAAGAGCAATGTCTCCAGAACCAGAAAAAGTTGGAAAATTGGATAAAATCTAAAAATCCAGACAATCACACAGAAACAACCGAACTAAGCGTAGTACCAGAAATGGTGGTAGCACCAGAATTAAATTCAACTCACAACAGTTCCAACTCAACTTCCTTAGCAGATATTAGCTtacaaattaaagaagaacCTCAAGATCATGATCATATTGAAGAACATCACATCCATCAAGATGATATTGTCAACAATCATTCTGATACTCTGGTTTCGCAATTAGATCACCATGATGAATCTCATAATGAAGTTCAATCTGAAGTCATTAATCACAACAATGTTGTAGTGAAATCGGAACCATTGGACATGGATGGATTGGAACACATGGAAGAAGAGTACAATGAATTTCCACCTAATTTATCTCCCCAACATTTGGAAAATGGTGATGATTTACAAGAACCGTTAGTTGTCAGAAGTGCCGCTTTGAATAGAACATGTAGCGTTTGTGGCAAATTATTTAGTAATGCAGGAAACAAAAAAAAGCATGAAAGGATGCAGCATGGTCTTCACAATAACATTTGTATTGCTACGCCAATTAACGGTCTTGTCAACGGCGACGGTCAACCAAATGCCCAACTTCAAACGGAAcaacaaaaaatcttaaattCCATGAGCTTTAAAGTGCTAAAGACAAAGTCGATAGAAACCCCAGAGAATTTAACGAAAATCGAAAATAGTTATGGAGAAAAATGCAAAGCGATGGTCAGCATGCATAAAACGTTGATTTGCGCTTGCCATAACGTTCCGCATCAGAATCTTAAGGGTTTATTATCGCATTTGCGCGCTTTGAGGATCTGGTTTCCAGTATTTACTTGTTACAACTGTATGATAACCTTTACGGATAGGTCGACGTTCACCAGACACATTTCAAGaTGCCAGAGCGCTCCCTTAGATACAATAACAAAATTGAGCGAGCTAAGAACACGCTCCGAAGTAAAAACTAGACTGTATCAAAACTTTAAATGCACCATTTGCAAATTTATGTTCAGTTTCCACGAACACTTTTGCAAACACGTCGACGAAGATCATGCCATGCAACAGTTCCCGGTGCATTGTCCCTGCGGCAAAACCTGCGAAAACGAAGAGGAGTATAAGGACCACGTTTACGTCAGTTGTTTGGTTGAATTTTACTGCGACATATGCTTCGTTACGACGAAAACTCTGGATGATTTCCAGAAACATGCCGCCGGTGTGCACGATGAATCCGAAGGATTTATACTTCTTCAAGATGATAATTATAAAGTTCGCAAACCTTCGATGCACGTTAGCCCTCCGGGGGTGGACGAAGGAGTCATTATACAAGGAAAACGTGAGAGGAAGTCATCATTCAAGACTCCCTTGTACGATGACGATATGGACGAAATCCTACCAACTAGTCTTGCATCGGCAACCTACTACACCCCCAAAACTACAAACCGAGTATGCCCCATTTGCTACAAGGAGTATTCTTCCTACAAGAATATGATGCGACATTACAAGACTCATAAACCCGAAGAGATACAGAATCATCAACAGCAACAACATCTGGAACAAGGCTTCTCGGAATTCCAGGACTTCCAAGATCAATCACAAGAATCCCAAGATATGAATTTGGAAGAGGAAGAATCATTCTATTCCTGTCCGGATTGTGGGGGGATGTACAGCAACATGGAATGGAAGATACATTTGACGGAGGCGCATCAGTCGAAAGCTTGTGGCGAATGCGGAAAATTCTTCCAGTTCCAGAGCGAACTCGATCAACACAGGAGCGTCCATTTGAATCTTAAAgtgTACAGAGACTCCAAAACGCAGTCTTACAAGAGCACCATGATCAGTCCTGGTAGCGAAGGCGAAGAAATGTTGGGATGCGAAATGTGCGACTTGTTGTTCACTTCCAAAGAGGATCTGATGACGCATCAGCTGGAACAGGGACACACCGGCGTTAACAACATGGAAATCGCCGAAACTAAACAAGAAATTGTTCCCCCGCCGAAGAAATATATATGCGACATCTGCGAACAAGAATTCAACAATTACAACGGCTTATGGGAACATAATAGAACCAGACATCCAGAAAGAAAAACCCCTCACGCCGATACGTACCCCAAACAGTGCAAGGACTGCGATAAAGTTTGTACGACGGGGGCAGCTTATTACAGACATAGACAGATACATGAAAAAGTACCGAGCGACGCCGGCGCCAGCAAGGCGTCTTTAATCAAACCAAAGAGATCCGGTGATCCGGAGGAGGAGTCCTATCACACTTGCAAACGTTGCTTCAAAGTGTTTTCCAGCAAATACAATCTTAAAAACCATTTGAAATGTCACGGAATCAACATAAATCCGGTGAGTAAGAAGTTGGTGAGGAAAGCAGCCTGTAAAGTGTGTCAACAGGAATTCGAAACGAACGAAGAACTGATCAGACATAAACAAGAAGTCCACAACAGCGTCGAAACGCCAGTAGATGATATGGAAATGGCATCTTTAGTTTTCCCTTGCGATACTTGCGTGATGACTTTCAGTAGCAAGGCTGCTTTGAAGAAACATAAAGAAAAGCACAGTTTGGAGTATAAATCTCTTCACCGACAAGTTTATTGTAAATTCTGCAAGATTTCCTTCGAGAATTTCCAAAGTTTAAGCCAACACATGCAGGTCGAACACGACGAGAAAGTGAAGATGACGCCGAAGGCGAAAACCAACGATTTTACTTGTTCGATTTGTCAAAAATCGTTCCATACGTCCGGTGCTCTAACGACACACATCGGATGGCATAAACGTGCTCTGAACGACAGCAGTTCGAAGCTGTTGAAACACGTTCCTCCAGCTGCAGCTGCGGTGGTGCCAGCACCTCGATTGCATCAGGTGAATATTAAAGAAGAACCGATGGACGTCGTTTCCAAATACCAGTGCGATACTTGCTTGGCTGAGTTACCGAACGACACCGCTCTTCAAGTGCATATTTTGGAGAAGCACAGAAGCGTCAGCGCCATCATGTTGATCCCGCGCTGTAATACTTGCAACAAGGACTTTGCCACGCAAGACGAATACGAGACGCATAAAAGATTGCACGATTTCTTGGAACGCCAGAAACAGCACGAGCAGAAGATGTTGGTGCAACAAGACATGCCGGGACAACGCATGTCGCAGTCCAGCAAACAAAAGAGTTTTCCTTGTAAACATTGTAACGCAGCTTTCAGCAGGTCTGACACGTTGGGTGCTCACATTAGACAGTTCCATAAAGAACACGTTCAGACGGAATTCAAATGTAATCAGTGCGATCGGGTGTTCGAGAAACAAAATTCATTGACGATTCATTTGAAAGTTCACGAGAAACAGAAAGCTACCGCTTCTCCTGCCGGCAAGCCGCTGTTTTCCTGTTCCATCTGCAATATGGGATTTGATTTACCAAAGGATTTGCGAGCTCATACTATTACGGCTCATCCTTTTTGA
- Protein Sequence
- MVEAEIVADFQSCCRLCLTEIVESIKSIFDETIEDRKLSEKIHQSVAIQINCSDKLSTKVCESCIEKVDGWYAYKEQCLQNQKKLENWIKSKNPDNHTETTELSVVPEMVVAPELNSTHNSSNSTSLADISLQIKEEPQDHDHIEEHHIHQDDIVNNHSDTLVSQLDHHDESHNEVQSEVINHNNVVVKSEPLDMDGLEHMEEEYNEFPPNLSPQHLENGDDLQEPLVVRSAALNRTCSVCGKLFSNAGNKKKHERMQHGLHNNICIATPINGLVNGDGQPNAQLQTEQQKILNSMSFKVLKTKSIETPENLTKIENSYGEKCKAMVSMHKTLICACHNVPHQNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTRHISRCQSAPLDTITKLSELRTRSEVKTRLYQNFKCTICKFMFSFHEHFCKHVDEDHAMQQFPVHCPCGKTCENEEEYKDHVYVSCLVEFYCDICFVTTKTLDDFQKHAAGVHDESEGFILLQDDNYKVRKPSMHVSPPGVDEGVIIQGKRERKSSFKTPLYDDDMDEILPTSLASATYYTPKTTNRVCPICYKEYSSYKNMMRHYKTHKPEEIQNHQQQQHLEQGFSEFQDFQDQSQESQDMNLEEEESFYSCPDCGGMYSNMEWKIHLTEAHQSKACGECGKFFQFQSELDQHRSVHLNLKVYRDSKTQSYKSTMISPGSEGEEMLGCEMCDLLFTSKEDLMTHQLEQGHTGVNNMEIAETKQEIVPPPKKYICDICEQEFNNYNGLWEHNRTRHPERKTPHADTYPKQCKDCDKVCTTGAAYYRHRQIHEKVPSDAGASKASLIKPKRSGDPEEESYHTCKRCFKVFSSKYNLKNHLKCHGININPVSKKLVRKAACKVCQQEFETNEELIRHKQEVHNSVETPVDDMEMASLVFPCDTCVMTFSSKAALKKHKEKHSLEYKSLHRQVYCKFCKISFENFQSLSQHMQVEHDEKVKMTPKAKTNDFTCSICQKSFHTSGALTTHIGWHKRALNDSSSKLLKHVPPAAAAVVPAPRLHQVNIKEEPMDVVSKYQCDTCLAELPNDTALQVHILEKHRSVSAIMLIPRCNTCNKDFATQDEYETHKRLHDFLERQKQHEQKMLVQQDMPGQRMSQSSKQKSFPCKHCNAAFSRSDTLGAHIRQFHKEHVQTEFKCNQCDRVFEKQNSLTIHLKVHEKQKATASPAGKPLFSCSICNMGFDLPKDLRAHTITAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00459154;
- 90% Identity
- -
- 80% Identity
- -