Ocom069414.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- JRK
- Assembly
- GCA_035357415.1
- Location
- CM068991.1:18887732-18889623[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-10 5e-08 34.9 0.1 2 37 16 51 15 56 0.93
Sequence Information
- Coding Sequence
- ATGGTACGAAAATACACAAGAAAGACAAATCGTCAAAATTGGTCTAAAGAGTCAATGGAAGAAGCAGTACAGTCGATTATTGAGGGTACCATGGGTTATAAAAAAGCAGCGCAGCAATTTAAGGTGCCTCAAACCACATTAGAACGTTATGTTGCAAAAGCAAAAAGAGATGTGAGGTCAAAGTTTAAAATAGCGCAATTAGGGAGCGCCAGAAATGTGTTTACCGAAGCTCAAGAGTTAGAGATTGTGAAATACGTAAAAGACATGGAATCAAGATTATTCGGCTTTACAATGAGAGAGTtaagaaaatttgtttatcaactGGCGGTCGTAAACGGTGTTGCAAACAGGTTTAATAAAGACACTCAGATGGCCGGTCCTGACTGGATGGAACATTTTCTTCGAAAACACCCTACCATAACCCTAAGAAAGCCAGAAGCCACGTCAGGAGCTAGAGCAATGGGCTTCAATAAGGTTGCTGTGAATCAGTTCTTTGGTTTGCTCACAAGTGTTATCGATAAATATCAATTAACTGCAGAGAAGATTTTCAATTGTGATGAGACAGGTATCACAGTAAATCCAAAGGGACATTCAAGGATATTAGCACTTAAAGGAAAACGCCAAGTAGGAGTTCTCACTTCTGCAGACAGGGGGGAAACCGTGTCTGTTGAAATTTGCTGCTCAGCTTCGGGAAGTTATTTTCCTCCTTGCCTTGTTTTTCCCAGAAAAAGAAAACGCCCtgaatttgaaaatggtttGCCTCCCGGTTCTATGGTTGAAACAAGTGATACTGGTTGGATGACTCGAGATATTTTTTTCAGgtggtttaaaaaatttgttcaattttgtGGGGCTTCGAAAGATAACGCcgtacttttaatttttgatgGCCATGCTAGTCATACAAAAAATCTTGACCTTATTAATTATGCCCGAGAAAATGGAGTGATTCTGCTGTGTTTACCACCTCATTGTTCGCAAAAGTTGCAACCTTTGGACGTCGGCTTTATGAAACCTCTAAGCAACTACTATGAAAATGAAGTAAGAGTATGGCTACGAAGTAATCCCGGAAAAGTCGTAACACTTTGGCAAATTTCGACTCTCTTTGGCGCCGCCTATGTTAATGCAGCAACAATGAAAACTGCTATGAGTgctttcaaaaaaactggaATTTGGCCACCGaatgaaaatgtttttgaagaaagtgACTTTTTACCAGCTTCTACGACAGATATCCCTTTAGGCGATGAAGGCAATGAAGAGCAATCCTTAGGAGAAAATGCCCATCAGACTCCAGAAAAATCAGCGATCTATAAAAATAGAGTAGAGACAACTCCGCCTCCACATGTGCCAATGAAAAACATCAACAATGATTCTTCGCCCTTACCACAATGTTCGTGGATGCCTGATGCCCCTCCAGCTCGTAAAGAGACACCGAATGAGATAGTTCTACAGGAGCCAAATATATTTCCTCTTGCATCGCCGCAAGATTTGCAGCCAATTCCTAAAAAAGCTAATAGTGTCAAAAGAAAAATAGGCAGTGTAGGGAAAAATACTAAGAAAAAAGCAGTtcctaaattaacaaaaaaagaagcACTGAAGggcaaaaataatgaagactCCACAAGTGAAGAAGACGATGCGATATGTTTTTATTGCGAAGAATTTTATAGTACTTCCACTGAAGGGTGGATTTCATGTTGTCTTTGTCACAAATGGGCTCATAATTCCTGCGCAGGTATTGACAGCGATGACGATGAGACTGTGTTCCGATGTGAATTATGttcctaa
- Protein Sequence
- MVRKYTRKTNRQNWSKESMEEAVQSIIEGTMGYKKAAQQFKVPQTTLERYVAKAKRDVRSKFKIAQLGSARNVFTEAQELEIVKYVKDMESRLFGFTMRELRKFVYQLAVVNGVANRFNKDTQMAGPDWMEHFLRKHPTITLRKPEATSGARAMGFNKVAVNQFFGLLTSVIDKYQLTAEKIFNCDETGITVNPKGHSRILALKGKRQVGVLTSADRGETVSVEICCSASGSYFPPCLVFPRKRKRPEFENGLPPGSMVETSDTGWMTRDIFFRWFKKFVQFCGASKDNAVLLIFDGHASHTKNLDLINYARENGVILLCLPPHCSQKLQPLDVGFMKPLSNYYENEVRVWLRSNPGKVVTLWQISTLFGAAYVNAATMKTAMSAFKKTGIWPPNENVFEESDFLPASTTDIPLGDEGNEEQSLGENAHQTPEKSAIYKNRVETTPPPHVPMKNINNDSSPLPQCSWMPDAPPARKETPNEIVLQEPNIFPLASPQDLQPIPKKANSVKRKIGSVGKNTKKKAVPKLTKKEALKGKNNEDSTSEEDDAICFYCEEFYSTSTEGWISCCLCHKWAHNSCAGIDSDDDETVFRCELCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00195921;
- 90% Identity
- iTF_01105607; iTF_01105608; iTF_01105611; iTF_01105601; iTF_01105610; iTF_01105612; iTF_01105613; iTF_01105614;
- 80% Identity
- -