Bpel020814.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- JRK
- Assembly
- GCA_963991005.1
- Location
- OZ022559.1:55902052-55903958[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.6e-11 1.3e-08 35.8 0.1 1 37 15 51 15 56 0.94
Sequence Information
- Coding Sequence
- ATGGTACGAAAATACAAAAGAAAGACAACTCGTCAAAATTGGTCTGAAGAGTCAATGAAAGAAGCAGTACAGGCGATTATTGAAGGTATCATGGGTTATAAAAAAGCAGCGCAGCAATTTAAGGTGCCTCAAACTACATTAGAACGTTATGTTGCAAAAGCCAAAAGAGATGCGgggtcaaattttaaaatagcgcAATTAGGCAGCGTCAGAAATGTGTTTACCGAAGCTCAAGAGTTAGAGATTGTGAAATATGTAAAAGACATGGAATCAAGATTATTCGGCTTTACAATGACAGAGTTAAGAAAATTTGTTTATCAATTGGCGGTCGTAAATGGTGTTGCAAACAGATTTAGTAAAGACAATCAGATGGCCGGTCCTGATTGGATGGAACATTTTCTTCGAAAACACCCTACCATAACCCTAAGAAAACGAGAAGCCACATCAGGAGCTAGAGCAATGGGCTTCAATAAGGTTGCAGTGAATCAGTTCTTTGGTTTGCTTACAAGTATTATCGATAAGTATCAATTAACTGCAGAGAAGATTTTCAATTGTGATGAGACAGGTATCACTGTTAATCCAAAGGGACATTCGAGGATATTAGCACCTAAAGGAAAACGTCAAGTAGGAGTTCTCACTTCTGCAGAGAGGGGGGAAACCGTGACTGCCGAAATTTGTTGCTCAGCTTCGGGAAGTTATTGTCCTCCTTGCCTTATTTTTCCCAGAAAAAGAAAACGCCCTGAATTTGAGATTGGTTTGCCACCTGGATCTATGGTTGAAACAAGTGAATCTGGTTGGGTGACTGGAGATATTTTTTTCAGatggtttaaaaaatttgttcaatTTTCCGGGGCTTCAAAAGATAACGCcgtacttttaatttttgatggTCATGCTAGCCATACAAAAAACCTTGACCTTATTAATTATGCCCGAGAAAATGGAGTGATCCTGCTGTGTTTACCACCGCATTGTTCGCACAAGTTGCAACCTCTGGACGTCGGCTTTATGAAACCTCTCAGTAACTACTACGAAAATGAAGTAAGATTATGGCTACGAAGTAATCCCGGAAAAGTCGTGACACTTTGGCAACTTTCGACTCTTTTTGGCGCTGCCTATGTTAACGCAGCAACAATGAAAAATGCTATGAGTGCTTTCAGAAGAACCGGAATTTGGCCACCGAATGAAAATGTTTTTGAAGAGAGTGACTTTTTACCAGCTTCTACAACAGATATTCCTTTAGACGACGAAGGCAATGAACAGCAATCGTTAGGAGAAAATGCCCATCAGACACTAGAAAAATCTGTTATCCATAGAAATAGAGACCATAGAGTAGAGACAACTCCGCCTTCACGTGTGCCAATGAAAAACATCAACAATGATTCTTCGCCATTACCACAATGTTCATGGATGCCTAATGCCCCTCCAACTCGTGAAAAAACACCGAATAAGGTAGTTCTACAAGAGCAAAATATATTTCCTCTTGCATCACCGCAAGATTTGCAGCCAATTCCTAATGACAAAAATAATGAAGATTCCACAAGTGATGAAGACGATGCGATATGTCTTTATTGCGAATATTTTTATAGAACTTCCATCGAAGGATGGATTTCATGTTGTCTTTGTCACAAATGGGCTCATAATTCCTGCGCAGGTATTGACAGCGATGACGATGAGACTGTGTTCCGATGTGAATTATGTTCCTGA
- Protein Sequence
- MVRKYKRKTTRQNWSEESMKEAVQAIIEGIMGYKKAAQQFKVPQTTLERYVAKAKRDAGSNFKIAQLGSVRNVFTEAQELEIVKYVKDMESRLFGFTMTELRKFVYQLAVVNGVANRFSKDNQMAGPDWMEHFLRKHPTITLRKREATSGARAMGFNKVAVNQFFGLLTSIIDKYQLTAEKIFNCDETGITVNPKGHSRILAPKGKRQVGVLTSAERGETVTAEICCSASGSYCPPCLIFPRKRKRPEFEIGLPPGSMVETSESGWVTGDIFFRWFKKFVQFSGASKDNAVLLIFDGHASHTKNLDLINYARENGVILLCLPPHCSHKLQPLDVGFMKPLSNYYENEVRLWLRSNPGKVVTLWQLSTLFGAAYVNAATMKNAMSAFRRTGIWPPNENVFEESDFLPASTTDIPLDDEGNEQQSLGENAHQTLEKSVIHRNRDHRVETTPPSRVPMKNINNDSSPLPQCSWMPNAPPTREKTPNKVVLQEQNIFPLASPQDLQPIPNDKNNEDSTSDEDDAICLYCEYFYRTSIEGWISCCLCHKWAHNSCAGIDSDDDETVFRCELCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00195908; iTF_01515907; iTF_00646789; iTF_00020139; iTF_01105607; iTF_01105611; iTF_01105601; iTF_00020133; iTF_01105610; iTF_01105612; iTF_01105613; iTF_01105614; iTF_00020143; iTF_01105615; iTF_01105608; iTF_01238571;
- 90% Identity
- -
- 80% Identity
- -