Ocom069415.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- JRK_1
- Assembly
- GCA_035357415.1
- Location
- CM068991.1:18888486-18889623[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-10 2.5e-08 35.9 0.1 2 37 16 51 15 56 0.93
Sequence Information
- Coding Sequence
- ATGGTACGAAAATACACAAGAAAGACAAATCGTCAAAATTGGTCTAAAGAGTCAATGGAAGAAGCAGTACAGTCGATTATTGAGGGTACCATGGGTTATAAAAAAGCAGCGCAGCAATTTAAGGTGCCTCAAACCACATTAGAACGTTATGTTGCAAAAGCAAAAAGAGATGTGAGGTCAAAGTTTAAAATAGCGCAATTAGGGAGCGCCAGAAATGTGTTTACCGAAGCTCAAGAGTTAGAGATTGTGAAATACGTAAAAGACATGGAATCAAGATTATTCGGCTTTACAATGAGAGAGTtaagaaaatttgtttatcaactGGCGGTCGTAAACGGTGTTGCAAACAGGTTTAATAAAGACACTCAGATGGCCGGTCCTGACTGGATGGAACATTTTCTTCGAAAACACCCTACCATAACCCTAAGAAAGCCAGAAGCCACGTCAGGAGCTAGAGCAATGGGCTTCAATAAGGTTGCTGTGAATCAGTTCTTTGGTTTGCTCACAAGTGTTATCGATAAATATCAATTAACTGCAGAGAAGATTTTCAATTGTGATGAGACAGGTATCACAGTAAATCCAAAGGGACATTCAAGGATATTAGCACTTAAAGGAAAACGCCAAGTAGGAGTTCTCACTTCTGCAGACAGGGGGGAAACCGTGTCTGTTGAAATTTGCTGCTCAGCTTCGGGAAGTTATTTTCCTCCTTGCCTTGTTTTTCCCAGAAAAAGAAAACGCCCtgaatttgaaaatggtttGCCTCCCGGTTCTATGGTTGAAACAAGTGATACTGGTTGGATGACTCGAGATATTTTTTTCAGgtggtttaaaaaatttgttcaattttgtGGGGCTTCGAAAGATAACGCcgtacttttaatttttgatgGCCATGCTAGTCATACAAAAAATCTTGACCTTATTAATTATGCCCGAGAAAATGGAGTGATTCTGCTGTGTTTACCACCTCATTGTTCGCAAAAGTTGCAACCTTTGGACGTCGGCTTTATGAAACCTCTAAGCAACTACTATGAAAATGAACAACAATGA
- Protein Sequence
- MVRKYTRKTNRQNWSKESMEEAVQSIIEGTMGYKKAAQQFKVPQTTLERYVAKAKRDVRSKFKIAQLGSARNVFTEAQELEIVKYVKDMESRLFGFTMRELRKFVYQLAVVNGVANRFNKDTQMAGPDWMEHFLRKHPTITLRKPEATSGARAMGFNKVAVNQFFGLLTSVIDKYQLTAEKIFNCDETGITVNPKGHSRILALKGKRQVGVLTSADRGETVSVEICCSASGSYFPPCLVFPRKRKRPEFENGLPPGSMVETSDTGWMTRDIFFRWFKKFVQFCGASKDNAVLLIFDGHASHTKNLDLINYARENGVILLCLPPHCSQKLQPLDVGFMKPLSNYYENEQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01515892;
- 90% Identity
- iTF_01515892;
- 80% Identity
- -