Ocom062124.1
Basic Information
- Insect
- Ophraella communa
- Gene Symbol
- -
- Assembly
- GCA_035357415.1
- Location
- CM068990.1:12835751-12842719[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-10 3.4e-08 35.4 0.0 1 39 162 201 162 205 0.90 2 4 1.1e-11 2.4e-09 39.1 0.1 1 39 216 254 216 257 0.95 3 4 1.2e-17 2.7e-15 58.2 0.0 1 45 271 316 271 316 0.98 4 4 3.7e-15 8.2e-13 50.2 0.0 1 39 323 362 323 364 0.95
Sequence Information
- Coding Sequence
- ATGAAGacTATATTTTCTCACTTCGGCGTCGACACAGATGATTTCCCCCCCGAACCTCCAGCTCCCTCAGCAATTCCCGTCGGTCATGTCGACATGTCAACCACTGCCGTCGATCATTCCCCCACCCGGACGATACTTACTGGACCTATACATCGTACGGATATATCAGACTCTACGAAGTATACtcttgaaattaaaaaagagGCCGACATTAAATTGGAAACGTTAAGATCATACGACCAAGACAGTTTATTGGACATGGAGTCGCATTTGTCAGGACCCGACCATTCAATGGATAGCCACGATGACGGAGATAGGAGCATCCATCATCTTATGGGACACCATGCGGATTTCAGCGGGATTCCCGGAGTTTCTAATAGTCTAGATGTAAATAATGATGACCAAGTACCTGGAATGAAAAATAACGGCCATAGTGAAAATATAACACCAAATAGATCCCATGGTGGTGGACCAAAGACTTGGACACAAGAAGATATGGATATGGCGTTAGATGCCTTAAGAAACCATAATATGAGTCTTACCAAGGCATCTGCTACCTATGGAATTCCCTCCACAACTCTATGGCAAAGAGCTCATAGGCTAGGAATAGATACACCCAAAAAAGAAGGACCTACCAAATCTTGGActgaagaaaatttaaataatgctCTGGAAGCATTAAGGACAGGCACGATATCGGCTAACAAAGCTAGCAAAGCATTTGGCATTCCCAGTAGCACCCTGTACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCTTTTAACGCGGCTCCGACGACATGGACTCCGGATGACTTAGAAAAAGCCCTAGAGTCCATAAGGACGGGTCAAACTTCCGTGCAAAAAGCCTCGACAGAGTTCGGAATTCCCACCGGAACTCTCTATGGCAGATGCAAAAGGGAGGGAATAGAGTTGTCAAGGTCAAACCCCACTCCTTGGTCAGAAGATGCGATGGGAGAAGCTTTGGAAGCTGTTAGGTTAGGCCATATGTCCATCAACCAAGCGGCCATCCACTACAACCTGCCTTACTCTTCGCTGTATGGTCGCTTCAAGCGCGGTCTTAAATTCGAAGCTGATATCGTAGACTATCATGATCTCAACCAGGACAGCCAGTTGCAAATGGATCACACGTTTGGAATGGAATACACAACCTCTCCACCTCAGATTCAATATCAGAATCAGAACAGTTGA
- Protein Sequence
- MKTIFSHFGVDTDDFPPEPPAPSAIPVGHVDMSTTAVDHSPTRTILTGPIHRTDISDSTKYTLEIKKEADIKLETLRSYDQDSLLDMESHLSGPDHSMDSHDDGDRSIHHLMGHHADFSGIPGVSNSLDVNNDDQVPGMKNNGHSENITPNRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGLKFEADIVDYHDLNQDSQLQMDHTFGMEYTTSPPQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00329065;
- 90% Identity
- -
- 80% Identity
- -