Chae013438.1
Basic Information
- Insect
- Chrysolina haemoptera
- Gene Symbol
- -
- Assembly
- GCA_958298965.1
- Location
- OY282586.1:38256884-38268442[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.8e-11 2.2e-08 35.4 0.0 1 39 179 218 179 222 0.90 2 4 2.6e-12 5.9e-10 40.4 0.1 1 39 233 271 233 274 0.95 3 4 9e-18 2e-15 57.9 0.0 1 45 288 333 288 333 0.98 4 4 1.3e-15 3e-13 51.0 0.0 1 39 340 379 340 382 0.94
Sequence Information
- Coding Sequence
- ATGGGATCGCCACCGAATGAAGGCAACTCCTTTGGCATTGATTATCTTGTTAGAATTTTGACAATCTTCTCCCAGTTTGGAGTGGACACCGATGATTTCCCGCCAGAACCCCCCGCTCCTTCGGCCATACCAGTTGGACACATGGACATGTCCACCGTTGAACATTCGCCCACACGCACTCTACTCACCACGCCGATCCATCGAATAGACATTTCCGATTCCACCAAGTTCACGTTGGACATAAAAAAAGAAGCCGATATCAAATTCGAAACTTTACGTTCCTACGATCAGGACAGCTTGCTGGATATGGAGTCCCATCTGTCTGGTCCGGATCATTCGATGGACAGTCACGACGATGGAAGCATGCATCAGGGAATGATGGGACAGAGCGATTTTGGAGATATGTTACCTGGAGTTTCGAGTAGATTAGATGTAAATAGTAGTGACGACCAAGTACCTGGAAGTAAAAATGGCCATTCTGAAAACATGCACACTCCACCACGATCGCACACTGGTGGTGGACCTAAAACGTGGACTCAGGAAGATATGGACATGGCTTTAGATGCCTTAAGAAATCACAATATGAGCCTTactaagGCATCTGCGACTTATGGTATTCCCTCCACTACTTTATGGCAAAGGGCGCATAGATTAGGAATAGATACTCCAAAGAAAGAGGGACCTACAAAATCCTGGACAGAAGAAAATCTCAACAACGCACTTGAAGCCTTGCGAACTGGTACAATTTCAGCTAATAAGGCTAGTAAAGCATATGgTATTCCTAGTAGCACATTGTACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCATTCAATGCAGCACCAACAACGTGGACACCCGAAGATTTAGAAAAAGCTTTAGAATCAATCAGAACCGGCCAAACCTCAGTACAAAAAGCCTCTACGGAATTTGGTATACCTACAGGAACACTTTACGGAAGATGTAAGAGGGAAGGAATTGAATTGTCCAGGTCGAACCCAACGCCCTGGTCTGAGGACGCCATGGGTGAAGCACTGGAAGCTGTTAGGTTAGGGCACATGTCAATCAATCAAGCAGCTATTCACTACAATCTGCCTTATTCTTCTCTTTATGGACGATTCAAACGTGGAATCAAGTATGATCCAGACAATGTTGATTTGAACCAAGACAGCCAGTTACAGTTGGACCATTCATTTGGAATGGAATACGCTACCTCTCCTTCTCAAATCCAATATCAAAATCAGAACAGCTGA
- Protein Sequence
- MGSPPNEGNSFGIDYLVRILTIFSQFGVDTDDFPPEPPAPSAIPVGHMDMSTVEHSPTRTLLTTPIHRIDISDSTKFTLDIKKEADIKFETLRSYDQDSLLDMESHLSGPDHSMDSHDDGSMHQGMMGQSDFGDMLPGVSSRLDVNSSDDQVPGSKNGHSENMHTPPRSHTGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDPDNVDLNQDSQLQLDHSFGMEYATSPSQIQYQNQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01105486;
- 90% Identity
- -
- 80% Identity
- -