Oard052156.1
Basic Information
- Insect
- Ophonus ardosiacus
- Gene Symbol
- -
- Assembly
- GCA_943138245.1
- Location
- CALPBP010002602.1:212374-213171[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.2e-05 0.42 12.4 0.3 25 44 117 136 111 144 0.87 2 5 0.38 3.1e+03 -0.0 0.1 26 45 146 165 139 173 0.85 3 5 0.5 4e+03 -0.4 0.0 26 46 174 194 168 200 0.86 4 5 0.0007 5.7 8.8 0.0 27 45 203 221 196 227 0.91 5 5 0.0012 9.8 8.0 0.1 26 47 230 251 221 258 0.85
Sequence Information
- Coding Sequence
- ATGGCGCAGATGAGCGCCATCTTGCAGGCAGACAGATCTGAATCAGAGGACGAAAGTACGGTAGAAGAACCCAATGTTGCCAACTTTTTAGAAGTTTTCATTAAAGAAGAACCACGCGAGGAAGACTCCAAAAACAGTGCAGTGCGTGATCAATTATTACACAAAACAGACAATATTGAAAATTGCAGTAAAGAGAAACAAATTATTGAAAAGACGGACgaagtttattttaaacaagAACATCACGAAGAAAATTCCGAGAATAGTGAAGTGTGTGATGACGCTGACATAGTGCAAGAAACAGACAATATTGTAAATTGTAGTACAGATGGAGAAATATCTGAAAAATCACATTGCCCAATATGTAATAAGGTGATCCTACATCCTAGTAATATGAAAAGACATATTATAACACATACTCGCAATAAGGGCTACCAGTGTCAAgagtgtaataaattatttactcaGAATAGTAGCTTAACGAGACACATGAAATGTCATACTGGTATCAAGGAttttcaatgtaatatttgCCAGAAAACTTTTGCACAGAATGCTTATTTAACATATCATATGAAGGTTCATAGTGGTGTGAAAGAATTTGAATGTAATCTGTGTTATAAGGTCTTTAGCTGGAGTGATAAGTTAAAACGACATATGAAATCCCATTCAGGAATTAAAGATTTTCAATGCGAAATATGCAAGAAATCTTTTGCACAgaaaagaaatctaaaggtTCATATGACAATTcatactacaaaaaaaaaagtagtaAAACAACAAGTTAGGACGACATAG
- Protein Sequence
- MAQMSAILQADRSESEDESTVEEPNVANFLEVFIKEEPREEDSKNSAVRDQLLHKTDNIENCSKEKQIIEKTDEVYFKQEHHEENSENSEVCDDADIVQETDNIVNCSTDGEISEKSHCPICNKVILHPSNMKRHIITHTRNKGYQCQECNKLFTQNSSLTRHMKCHTGIKDFQCNICQKTFAQNAYLTYHMKVHSGVKEFECNLCYKVFSWSDKLKRHMKSHSGIKDFQCEICKKSFAQKRNLKVHMTIHTTKKKVVKQQVRTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01105073;
- 90% Identity
- iTF_01105073;
- 80% Identity
- iTF_01105073;