Oard030338.1
Basic Information
- Insect
- Ophonus ardosiacus
- Gene Symbol
- -
- Assembly
- GCA_943138245.1
- Location
- CALPBP010000878.1:90574-91887[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.14 1.1e+03 1.4 0.1 26 44 96 114 89 117 0.89 2 6 0.00048 3.9 9.3 0.2 16 45 113 142 101 151 0.82 3 6 0.0011 8.9 8.1 0.2 16 52 171 207 157 209 0.85 4 6 7e-06 0.057 15.2 0.0 21 44 245 268 228 274 0.88 5 6 0.0024 19 7.1 0.0 26 52 278 304 274 306 0.93 6 6 0.0052 43 6.0 0.2 23 49 303 329 300 333 0.79
Sequence Information
- Coding Sequence
- ATGTCTCAGGGAAACAAAGAGATACCTCCACCAAAAAGTGCGTCACCAGCACCACTAgcagaaaacataaaaatagaaCTCAAAAGAAAAGACACCGTTAAAAGTATATCAGAAATGATTGAGGAACCTGCACCAGAATTGTTGAACGCACTTGGTTTGATAAAAGTATCAGATATTGATAACATAAAAGGAATGAATTCCGATGAATCATTAAATAGCTCAACAAGTAgtataaatagtaaaaataaagactgcaaattaaataataataagaaaaaatcgtATAAATGTAAAGTATGTCGCGATGTGATGCACGATTATGGGGTTTACAGGCGACATTTAGCTTCTCACGGCGAACGCCCATACACTTGCAAAATCTGCGGGGAACATTTCAGCAAAGCCCGTGCCTTAAAAGAACACTCCTCAAACACCCACTCAGGTGACCGACCATATTCTTGCACTCAGTGCACATCAAAATTCGTCCGTCTTAGCGATTTAACAACCCATCTTCGAAAACACGCTGGCAATGCTCAACCGCACACATGTTCTATGTGCCGTAAACGATTTACAACAGCCAAACAACTTCGCGAACATTCTTCAATCCATGAAAACGAAAAACCGTTTATGAGATATAAAAAATCCCCCACTGGTTGCGGGGAACATGTCTGCAAACAATGTGATCGCAGATTCCGTAAAAAATGTGATTTGGAACGACACGAGCGAGTACATTCGGGGGAAAAGCCCTATACCTGTCCCCTATGCGACGGGAAATTCCAACAGGCtcataatttaacaaaacacaTGGTTACACATACTGGGGTAAGGTCCTACACTTGTGATATTTGCCAAAAGACATTTGGACGGTCGGATGTACTGACCCGACATATGCATGTCCATGAAGTTAGTAAACCATTCAGTTGTGAGTTTTGCTATAGAACTTTTGTACGACAATCACAACTTACTAATCATGTTATGAAGCGGCATcctaaaaaagaaaatacagcGAAAATATCTGCAAAAGAAAAGAATTTGAAAGTTATAAATGGTTCCAAAATAGCAAAACATTCTAATGTTAATGGATCCAAAATAAAACATTCTAATATTGTTAATGGTtctaaaatacaaaacaattccaatattaatatttccagAAAAAATAATTCGAATGTGATTAACGGTTCAATCAACGAAAATATTTCTCCAGCACAAAATGCTGgaaaaaaattcgaaaaagAAATTGATCTTAAAAAAGAATTTGAGTGA
- Protein Sequence
- MSQGNKEIPPPKSASPAPLAENIKIELKRKDTVKSISEMIEEPAPELLNALGLIKVSDIDNIKGMNSDESLNSSTSSINSKNKDCKLNNNKKKSYKCKVCRDVMHDYGVYRRHLASHGERPYTCKICGEHFSKARALKEHSSNTHSGDRPYSCTQCTSKFVRLSDLTTHLRKHAGNAQPHTCSMCRKRFTTAKQLREHSSIHENEKPFMRYKKSPTGCGEHVCKQCDRRFRKKCDLERHERVHSGEKPYTCPLCDGKFQQAHNLTKHMVTHTGVRSYTCDICQKTFGRSDVLTRHMHVHEVSKPFSCEFCYRTFVRQSQLTNHVMKRHPKKENTAKISAKEKNLKVINGSKIAKHSNVNGSKIKHSNIVNGSKIQNNSNINISRKNNSNVINGSINENISPAQNAGKKFEKEIDLKKEFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01105069;
- 90% Identity
- iTF_01105069;
- 80% Identity
- iTF_01105069;