Basic Information

Insect: Ophonus ardosiacus
Gene Symbol: Prdm5
Assembly: GCA_943138245.1
Location: CALPBP010002496.1:1-5402[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00091 0.17 14.0 1.4 1 23 159 182 159 182 0.95

2 14 4 7.3e+02 2.6 7.0 2 23 301 323 300 323 0.95

3 14 0.057 10 8.4 1.6 2 23 347 368 346 368 0.96

4 14 0.00021 0.038 16.0 1.2 1 23 371 393 371 393 0.99

5 14 0.0015 0.28 13.3 0.4 3 23 400 420 398 420 0.91

6 14 0.0084 1.5 11.0 3.7 2 23 427 448 426 448 0.97

7 14 7.1e-05 0.013 17.5 0.3 3 23 453 473 452 473 0.99

8 14 0.00018 0.034 16.2 5.0 1 20 479 498 479 501 0.95

9 14 3.8e-05 0.007 18.4 1.3 1 23 507 529 507 529 0.98

10 14 3.6e-06 0.00065 21.6 1.9 1 23 535 557 535 557 0.97

11 14 1.1 2e+02 4.3 5.1 1 19 564 582 564 585 0.87

12 14 2.8e-05 0.0051 18.8 2.4 1 23 592 614 592 614 0.97

13 14 1.9e-05 0.0034 19.3 2.7 1 23 620 642 620 642 0.96

14 14 0.00026 0.048 15.7 7.2 1 23 648 671 648 671 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00091	0.17	14.0	1.4	1	23	159	182	159	182	0.95
2	14	4	7.3e+02	2.6	7.0	2	23	301	323	300	323	0.95
3	14	0.057	10	8.4	1.6	2	23	347	368	346	368	0.96
4	14	0.00021	0.038	16.0	1.2	1	23	371	393	371	393	0.99
5	14	0.0015	0.28	13.3	0.4	3	23	400	420	398	420	0.91
6	14	0.0084	1.5	11.0	3.7	2	23	427	448	426	448	0.97
7	14	7.1e-05	0.013	17.5	0.3	3	23	453	473	452	473	0.99
8	14	0.00018	0.034	16.2	5.0	1	20	479	498	479	501	0.95
9	14	3.8e-05	0.007	18.4	1.3	1	23	507	529	507	529	0.98
10	14	3.6e-06	0.00065	21.6	1.9	1	23	535	557	535	557	0.97
11	14	1.1	2e+02	4.3	5.1	1	19	564	582	564	585	0.87
12	14	2.8e-05	0.0051	18.8	2.4	1	23	592	614	592	614	0.97
13	14	1.9e-05	0.0034	19.3	2.7	1	23	620	642	620	642	0.96
14	14	0.00026	0.048	15.7	7.2	1	23	648	671	648	671	0.97

Sequence Information

Coding Sequence: GTTGCAGACAGATTAATACTAAGAGATTACTGCCGATTATGTGCTAGGCAGTTACCTATAGCTTCAttaattccaatttttgataataaatttttaaattatggatATATGCTAGAGTACGTTATACCAGGATTGtttaaaaaagATGATAAATACCCCCACCAAATATGTTCTTCATGTATTGGCAAACTAGAATTGTCATACAATACATTGAAATCATTCAGAGAGTCcgacaaaattttgaaaaacatttttaatgaaaaaactgACAATTTCACTGAAGAAAACATAAAATCAGTTACAGGTGTCTCAAATTTGTTGAATACATTAGAACGAAAATCTTTGATTACATTAAGTTCAGATTCAAAAGCAGAAAAATGCACAGAGGAAGAAATTACAAAAGTATTAAAAACAAGTGCagaaaacattgaaaataacacaaataataaaaatgaggaagaagtacaaataaaatatcaatgtTCATTATGTTCAAAAGTATTTAACAATGAAAGAGAAATACGTGATCATTTAAAGTTTAGGCATTGTAACACAACAAATAAAAACTATCGAATAGTTAAAGTAAAATTGTGTAAAAAGAAAGACAAACCGATTACAAAAACTATTAATAcggaaacacaaaaaaaattagacACAAATGACACAAACGAACCTCAATCAAAAGAAGACACCAACACAGTCACTACTACAGAAAAGTTTCATTATGTGTACAAACACCAATGCTCAAAATGCTACAAAGTATATCGCATAGAACAACACCTAATATGCCACACAAAAGATCAACATCCAGAATTAGAAAAACCAGAAagcaaattaataaaagtgaaaaagaAAGGCGTTATCCGTATCTCGCCAAAACAACCCTCTACTACTCGTCTCGAATGTCTCCATTGCCATACACAACATCGAACAAAAGAATCTTTATTAAAACACACAAGATTATACCATCCTGCTGTAAAAATCGAAGAAGTGGTCTGCAggattttaaaatcaaaaaaatacagaaatcaCAGCATAACGTGCTTAAGATGCAGCGAAACCTTCGAAACTATTAAAAAGTATCGACTTCACATGACCAAACACGCCATATATAAATGCGAAGTTTGtggaattatttttgacaaattctACAAACTACGAAGCCacaaaaaagtacataatgtaatATTACAAACATGTATAGAATGTAATAAAGAGTTTCCCAGTAAAAGAGAACTAAAGAAACACGAAGAAATTCACATTGTAAACGAAAATGTCGAATGCGATATTTGCAAGGTTATGTGCACATCAAAATTTAAACTGAAGCAGCACAAAAGATATCATGTATCATCTTTATGCAATGTATGTGGAAAACTATTTGCTTCGGAGCAACAATTAAAGTATCATATCCAAACTCATTCAGACACGCGTCCTTACAAATGCTCAAACTGCGACAAAAGTTTTAAAACATCACAAACTCTAGCTAAACATAAAGAGTGCCATGCtttggacaaaaaatatgtttgtcaATTTTGCGGGAAACAGTTTAGAACTCAAggaacaataaaacaacatttACAATTACACAAAGATGTCAAAAAACATTCTTGTCGTGTCTGCGGAGTTAAATTCACCAGAAAAGGAAACTTAGTCAAACATATGGAACGACATAACCTCATCGACGATGTCTACAAATGTAAATTGTGCGAGAAACAATACAACAATTAccattctttaatatttcataaatgcaCAAAAACAGTCgctaaacaatatttttgtctaaCCTGCGAGAAAGCATTCCCCAGTAACTACCATCTAAAAATCCACCAACGTCTTCATTCTGGCGAAAGACCATTTTCGTGTGAAAAATGTTCAAAGTCATTTAGAAGCAAGCAATCTCTAAAACAACATCGTGTAATCCATTTTGACAATTTTCCCCATGAGTGTCAGTATTGTGACAAAAAATTCAGAAGGCGTCAGACTCTGGCTATTCATAAAAGAAGATGCCATAGTGaggaaaagaataaaaaaaatgttttgaaacAAGAGGGGATGATTAGTGATGATATAACTAATGATGATTACAGTGTTGATGTGGAAAGTAATATTCTGCACTCTGTTTTAAAGCATAGTCCATAA
Protein Sequence: VADRLILRDYCRLCARQLPIASLIPIFDNKFLNYGYMLEYVIPGLFKKDDKYPHQICSSCIGKLELSYNTLKSFRESDKILKNIFNEKTDNFTEENIKSVTGVSNLLNTLERKSLITLSSDSKAEKCTEEEITKVLKTSAENIENNTNNKNEEEVQIKYQCSLCSKVFNNEREIRDHLKFRHCNTTNKNYRIVKVKLCKKKDKPITKTINTETQKKLDTNDTNEPQSKEDTNTVTTTEKFHYVYKHQCSKCYKVYRIEQHLICHTKDQHPELEKPESKLIKVKKKGVIRISPKQPSTTRLECLHCHTQHRTKESLLKHTRLYHPAVKIEEVVCRILKSKKYRNHSITCLRCSETFETIKKYRLHMTKHAIYKCEVCGIIFDKFYKLRSHKKVHNVILQTCIECNKEFPSKRELKKHEEIHIVNENVECDICKVMCTSKFKLKQHKRYHVSSLCNVCGKLFASEQQLKYHIQTHSDTRPYKCSNCDKSFKTSQTLAKHKECHALDKKYVCQFCGKQFRTQGTIKQHLQLHKDVKKHSCRVCGVKFTRKGNLVKHMERHNLIDDVYKCKLCEKQYNNYHSLIFHKCTKTVAKQYFCLTCEKAFPSNYHLKIHQRLHSGERPFSCEKCSKSFRSKQSLKQHRVIHFDNFPHECQYCDKKFRRRQTLAIHKRRCHSEEKNKKNVLKQEGMISDDITNDDYSVDVESNILHSVLKHSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00767460; iTF_00766820;
90% Identity: -
80% Identity: -