Hrub049408.1
Basic Information
- Insect
- Harpalus rubripes
- Gene Symbol
- -
- Assembly
- GCA_963082715.1
- Location
- OY720457.1:43394183-43398854[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0045 1.1 12.1 1.5 1 23 250 273 250 273 0.94 2 14 0.0046 1.2 12.0 3.3 1 23 335 358 335 358 0.94 3 14 0.076 19 8.2 1.6 2 23 436 457 435 457 0.96 4 14 0.00063 0.16 14.7 3.6 1 23 460 482 460 482 0.98 5 14 0.002 0.5 13.2 0.7 2 23 488 509 487 509 0.90 6 14 0.00014 0.036 16.8 1.2 2 23 516 537 515 537 0.96 7 14 8.9e-05 0.023 17.4 1.2 3 23 542 562 541 562 0.98 8 14 0.00027 0.069 15.9 4.6 1 20 568 587 568 590 0.95 9 14 0.00045 0.11 15.2 0.8 1 23 596 618 596 618 0.97 10 14 1.3e-06 0.00032 23.2 1.3 1 23 624 646 624 646 0.97 11 14 2 5.1e+02 3.7 3.9 1 17 653 669 653 674 0.89 12 14 2.3e-07 5.9e-05 25.5 1.5 1 23 680 702 680 702 0.98 13 14 1.3e-06 0.00032 23.2 2.3 1 23 708 730 708 730 0.98 14 14 5.7e-06 0.0014 21.2 3.2 1 23 736 758 736 758 0.98
Sequence Information
- Coding Sequence
- ATGCCTTGTTGCTGTGCTATTAACTGTCATAATAGAAGTGGGGTACATTTTTATCGTATACCAAATAATGAACAGAGGCGTCATCAGTGGATTACAAACATTGGAAGAGCCGATAATTTATCCAAATATGCAATGCTTTGTGAaaaacattttGAAGATAATCAATTTGAGAAGCGGAAAGACAAGAAATTACTCTGGAATGCAGTGCctacaatttttgattttacgAATGTTAAACCTGATGCAAAAAAACGTATATCTGACAATATTAATGTTGCAGACAGATTAATACTAAGAGATTACTGCCGATTATGTGCTAAGCAGTTACCTATAGCTTCTTTAATAccaatttttgataataaatttttaaattacggAGATATGCTAGAATACGTTTTACCAGGATTGtttaaaaaagATGACATGTATCCCCACCAAATATGTTCTTCATGTATTGGCAAACTGGAATCATCGTACAATTCTTTGAAATCATTTAAAGAGTCCGAtagaacattaaaaaatatttttgatacaaAAACTGACAATTTCACCGGAGACATTAAATCGGTTAGCGGTGTCTCAAATttGTTGAATACATTAGAACGAAAATCTTTGATTACGGTAAGTGCAGATTCAAAGACAGAGGAAGAGGTTACACAAACATTGACAACAAGTGTAGAAGTTATTAAAAATCGAAACATCGAAAATaacacaaataataaaaatgaggaagaagtacaaataaaatatcaatgttCATTATGTTCCAAAGTATTTAACAATGAAAGAGAAATACGTGATCATTCAAAGTATAGGCATTGtgatataacaaataaaaactatCGAATAGTTAAAGTAAAATTGTGTAAAAAGAAAGATAAGCCTACAACAAATACTAGTGATACGGATCCACAAAAAAATCCAGATACAAATAACACTAACGAACCACAATCAAAAGAAAACACCGTCACTACCACAGAAAAGTTTTACTACATATACAAACACCAATGCTCAAAATGCTACAAAGTATATCGCGAACAACAACAATTAATATCCCACACGAAAGATCAACATCCAGAATTAGAAAAACCAGAAAGCAAATTAATAAAAGTCAAAAAGAAATGCGTTCTCCGCATCACACCGAAATTACTCTCTACTACCCGTTTCGAATGTCTCTATTGCCACACACAACATCGAAAAAAAGAAACTTTATTAAAACATACGAAATTGTACCATCCGGACGTAAAAGATGAAAAAGTGGTCTGTAggattttaaaatcaaaaaaatacagaaatcaCAGCATAACGTGCTTAAGATGCAGCGAAACCTTCGAAACTATTAAAAAGTATCGACTTCATATGACCAAACACGCCATATATAAATGTGAACATTGTGgaattatttttgacaagttctaCAAACTACGTAGccacaaaaaaatacataatgtaATACCACACATTTGTATAGAATGTAATAAAGAGTTTCCCAATAAAAGAGAACTAACAAAACATGAAGAAATTCACATTCAAAACGAAAACGTCGAGTGTGGTATTTGTAAGCAGATTTTTTCATCCAAATTTGAACTAAGGaaacacaaaaaaaatcatGAAGCATCGTTATGCAATGTATGCGGAAAACTATTTTCATCCGAACAACATCTAAAGTATCATATACAAATTCATTCAGATACGCGTCCTTACCAATGCTCAGACTgcactaaaaattttaaaaccccACAAAATCTATCTAAACATAAAGAATGCCACGCtttggacaaaaaatatgtTTGCCAATTTTGCGGAAAACAGTTCAGAACTATAGGAACAATAAAGCAGCATTTACAATTACACAAAGATGTTAAAAAACATTCTTGTGACGTTTGCGGAGTCAAATTCACCCGGAAAGGAAACTTGGTCAAACATATGGAACGCCACAACATCATCAACGATGTGTACAAGTGCAATTTGTGCAATCAACAATACAATAATTAccattctttaatatttcattcTTGCACAACAATCACTAAACAATATTCTTGTCTAATCTGTGACAAAACATTCTCCAGTAACTACCAACTAAAGATCCATCAACGTCTTCATTCTGGCGAACGGCCATTTCAGTGTGAAAAGTGTCCAAAGTCATTTAGAAGCAAGCAATCTCTAAAACAACATCGTTTGATCCATTTTGACAATTTCTCCCACGAATGTGAGTATTGTGACAAAAAATTCAGAAGACTTCAGAGTCTGGTTGCTCATAGAAGACGTCACAATGCGGAAAAGatgaagaataaaaaaaataatgctttGAAGCAAAAGGGGATAAGTGATGATAAAACTAATGATGATTATAGCATAGATGTGGAAAGTAATATTCTGCATTCTGTTTTAATGCAAAAACCAAAAATGTGA
- Protein Sequence
- MPCCCAINCHNRSGVHFYRIPNNEQRRHQWITNIGRADNLSKYAMLCEKHFEDNQFEKRKDKKLLWNAVPTIFDFTNVKPDAKKRISDNINVADRLILRDYCRLCAKQLPIASLIPIFDNKFLNYGDMLEYVLPGLFKKDDMYPHQICSSCIGKLESSYNSLKSFKESDRTLKNIFDTKTDNFTGDIKSVSGVSNLLNTLERKSLITVSADSKTEEEVTQTLTTSVEVIKNRNIENNTNNKNEEEVQIKYQCSLCSKVFNNEREIRDHSKYRHCDITNKNYRIVKVKLCKKKDKPTTNTSDTDPQKNPDTNNTNEPQSKENTVTTTEKFYYIYKHQCSKCYKVYREQQQLISHTKDQHPELEKPESKLIKVKKKCVLRITPKLLSTTRFECLYCHTQHRKKETLLKHTKLYHPDVKDEKVVCRILKSKKYRNHSITCLRCSETFETIKKYRLHMTKHAIYKCEHCGIIFDKFYKLRSHKKIHNVIPHICIECNKEFPNKRELTKHEEIHIQNENVECGICKQIFSSKFELRKHKKNHEASLCNVCGKLFSSEQHLKYHIQIHSDTRPYQCSDCTKNFKTPQNLSKHKECHALDKKYVCQFCGKQFRTIGTIKQHLQLHKDVKKHSCDVCGVKFTRKGNLVKHMERHNIINDVYKCNLCNQQYNNYHSLIFHSCTTITKQYSCLICDKTFSSNYQLKIHQRLHSGERPFQCEKCPKSFRSKQSLKQHRLIHFDNFSHECEYCDKKFRRLQSLVAHRRRHNAEKMKNKKNNALKQKGISDDKTNDDYSIDVESNILHSVLMQKPKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01105008;
- 90% Identity
- iTF_00766820;
- 80% Identity
- iTF_00766820;